JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
F2R_chr5_76711126_76740770	0/0	t0014	2450	1	1	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0015	2450	1	0	0	1	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0016	2450	1	1	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0017	2450	1	0	0	1	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0018	2450	1	0	1	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0019	2450	1	0	1	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0020	2450	1	0	0	1	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0021	2450	1	1	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0022	2450	1	1	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0023	2450	1	0	0	0	0	1	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0024	2450	1	1	0	0	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0025	2450	1	0	0	1	0	0	copy fasta	F2R	chr5	76711126	76740770
F2R_chr5_76711126_76740770	0/0	t0026	2450	1	0	0	1	0	0	copy fasta	F2R	chr5	76711126	76740770
F2_chr11_46714213_46744506	1/1	t0001	122	349	94	61	144	12	36	copy fasta	F2	chr11	46714213	46744506
F2_chr11_46714213_46744506	0/0	t0002	122	1	0	1	0	0	0	copy fasta	F2	chr11	46714213	46744506
F3_chr1_94524173_94546759	0/0	t0001	1408	118	22	18	57	3	18	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0002	1408	102	12	24	57	4	5	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/1	t0003	1408	95	14	26	35	8	11	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0004	1407	20	0	0	19	0	1	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0005	1408	15	15	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0006	1408	13	0	0	13	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0007	1409	11	2	0	7	0	2	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0008	1409	11	3	2	5	1	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0009	1409	11	1	3	5	0	2	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0010	1408	10	6	2	2	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0011	1408	6	6	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0012	1408	4	3	1	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0013	1409	4	0	0	4	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0014	1408	3	0	0	0	0	3	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0015	1407	3	0	0	3	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	1/0	t0016	1411	3	1	0	0	0	1	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0017	1409	2	0	0	2	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0018	1409	2	0	0	2	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0019	1395	2	0	0	2	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0020	1408	2	0	0	2	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0021	1408	2	2	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0022	1411	2	1	0	1	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0023	1407	2	0	0	2	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0024	1408	2	1	0	1	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0025	1409	2	2	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0026	1409	2	2	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0027	1408	1	0	0	1	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0028	1408	1	0	1	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0029	1408	1	0	0	1	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0030	1408	1	0	0	0	0	1	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0031	1407	1	0	1	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0032	1408	1	1	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0033	1408	1	0	0	0	0	1	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0034	1408	1	1	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0035	1409	1	1	0	0	0	0	copy fasta	F3	chr1	94524173	94546759