JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
F3_chr1_94524173_94546759	0/0	t0036	1409	1	0	0	0	0	1	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0037	1411	1	1	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0038	1408	1	1	0	0	0	0	copy fasta	F3	chr1	94524173	94546759
F3_chr1_94524173_94546759	0/0	t0039	1408	1	0	0	1	0	0	copy fasta	F3	chr1	94524173	94546759
F5_chr1_169506951_169591481	0/0	t0001	2458	89	20	25	32	5	7	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0002	2458	83	17	6	52	0	8	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/1	t0003	2458	53	16	14	8	5	9	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0004	2458	24	12	3	5	0	4	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0005	2458	24	2	8	10	3	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	1/0	t0006	2458	14	8	3	0	1	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0007	2458	3	3	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0008	2458	3	3	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0009	2458	2	0	1	0	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0010	2458	2	0	0	2	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0011	2458	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0012	2458	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0013	2458	1	0	0	1	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0014	2458	1	0	0	1	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0015	2458	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0016	2458	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0017	2458	1	1	0	0	0	0	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0018	2458	1	0	0	0	0	1	copy fasta	F5	chr1	169506951	169591481
F5_chr1_169506951_169591481	0/0	t0019	2458	1	0	0	1	0	0	copy fasta	F5	chr1	169506951	169591481
F7_chr13_113100791_113125685	1/0	t0001	1729	297	49	59	144	14	30	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0002	1729	29	0	10	19	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0003	1731	28	10	3	6	0	9	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0004	1731	8	7	0	0	1	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0005	1731	5	5	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/1	t0006	1725	5	0	1	0	2	1	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0007	1729	3	3	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0008	1731	2	0	0	0	0	2	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0009	1727	2	0	0	0	0	2	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0010	1731	2	2	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0011	1731	2	1	0	1	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0012	1731	2	2	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0013	1729	2	1	1	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0014	1729	2	2	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0015	1731	1	0	1	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0016	1731	1	1	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0017	1731	1	1	0	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0018	1729	1	0	0	1	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0019	1713	1	0	0	1	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0020	1717	1	0	1	0	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0021	1729	1	0	0	0	0	1	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0022	1729	1	0	0	0	1	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0023	1725	1	0	0	0	0	1	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0024	1729	1	0	0	1	0	0	copy fasta	F7	chr13	113100791	113125685
F7_chr13_113100791_113125685	0/0	t0025	1729	1	0	0	1	0	0	copy fasta	F7	chr13	113100791	113125685
F8A1_chrX_154881355_154893061	0/0	t0001	592	274	71	45	125	6	27	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	t0002	592	42	2	12	20	5	3	copy fasta	F8A1	chrX	154881355	154893061