JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
F8A1_chrX_154881355_154893061	0/0	t0003	592	6	5	1	0	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	t0004	592	1	0	0	1	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	t0005	592	1	1	0	0	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A1_chrX_154881355_154893061	0/0	t0006	592	1	1	0	0	0	0	copy fasta	F8A1	chrX	154881355	154893061
F8A2_chrX_155377095_155388801	0/0	t0001	592	128	39	18	59	4	8	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	t0002	592	101	4	31	41	7	18	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	t0003	592	32	28	3	0	0	1	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	t0004	590	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	t0005	594	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	t0006	592	1	0	1	0	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	t0007	591	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	t0008	594	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A2_chrX_155377095_155388801	0/0	t0009	593	1	0	0	1	0	0	copy fasta	F8A2	chrX	155377095	155388801
F8A3_chrX_155451914_155463620	0/0	t0001	592	141	3	32	78	7	21	copy fasta	F8A3	chrX	155451914	155463620
F8A3_chrX_155451914_155463620	0/0	t0002	592	99	35	17	35	3	9	copy fasta	F8A3	chrX	155451914	155463620
F8A3_chrX_155451914_155463620	0/0	t0003	592	30	26	3	0	0	1	copy fasta	F8A3	chrX	155451914	155463620
F8_chrX_154830792_155027723	0/1	t0001	1977	113	6	24	63	4	15	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	t0002	1977	107	52	20	18	5	12	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	t0003	1977	4	0	0	4	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	1/0	t0004	1977	4	3	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	t0005	1977	3	3	0	0	0	0	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	t0006	1977	1	0	0	0	0	1	copy fasta	F8	chrX	154830792	155027723
F8_chrX_154830792_155027723	0/0	t0007	1975	1	0	0	1	0	0	copy fasta	F8	chrX	154830792	155027723
F9_chrX_139525739_139568459	1/0	t0001	1415	181	53	32	71	5	19	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/1	t0002	1417	21	9	5	0	1	5	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0003	1413	18	0	4	8	3	3	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0004	1415	15	14	1	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0005	1413	11	0	0	11	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0006	1414	5	0	0	5	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0007	1415	4	0	0	4	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0008	1415	1	0	0	0	1	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0009	1416	1	1	0	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0010	1415	1	0	0	0	0	1	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0011	1415	1	0	0	0	1	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0012	1415	1	1	0	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0013	1413	1	0	0	1	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0014	1415	1	0	1	0	0	0	copy fasta	F9	chrX	139525739	139568459
F9_chrX_139525739_139568459	0/0	t0015	1415	1	0	1	0	0	0	copy fasta	F9	chrX	139525739	139568459
FA2H_chr16_74707969_74779820	1/1	t0001	1287	211	27	26	128	5	23	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0002	1287	65	12	26	15	3	9	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0003	1287	46	18	7	4	5	12	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0004	1287	9	7	2	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0005	1287	7	7	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0006	1287	7	1	0	6	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0007	1287	5	0	1	3	0	1	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0008	1287	5	0	0	5	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0009	1287	4	4	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0010	1287	4	4	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0011	1287	3	2	0	0	1	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0012	1287	2	2	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820