JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FA2H_chr16_74707969_74779820	0/0	t0013	1287	2	2	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0014	1287	2	0	2	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0015	1287	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0016	1287	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0017	1287	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0018	1287	1	0	0	0	0	1	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0019	1287	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0020	1287	1	0	1	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0021	1287	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0022	1287	1	0	0	0	1	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0023	1287	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0024	1287	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0025	1287	1	1	0	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0026	1287	1	0	0	1	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0027	1287	1	0	1	0	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0028	1272	1	0	0	1	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0029	1287	1	0	0	1	0	0	copy fasta	FA2H	chr16	74707969	74779820
FA2H_chr16_74707969_74779820	0/0	t0030	1287	1	0	0	0	1	0	copy fasta	FA2H	chr16	74707969	74779820
FAAH2_chrX_57281706_57494193	1/1	t0001	382	152	69	28	42	3	8	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	t0002	382	127	1	24	79	7	16	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	t0003	384	1	0	1	0	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	t0004	379	1	0	0	1	0	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH2_chrX_57281706_57494193	0/0	t0005	382	1	0	0	0	1	0	copy fasta	FAAH2	chrX	57281706	57494193
FAAH_chr1_46389317_46418845	1/1	t0001	303	361	87	61	151	16	44	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	t0002	290	7	1	0	5	0	1	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	t0003	303	1	0	0	0	0	1	copy fasta	FAAH	chr1	46389317	46418845
FAAH_chr1_46389317_46418845	0/0	t0004	303	1	0	1	0	0	0	copy fasta	FAAH	chr1	46389317	46418845
FAAP100_chr17_81534891_81557353	0/1	t0001	951	201	36	36	88	9	31	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0002	952	106	16	25	53	5	7	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0003	952	70	12	8	43	1	6	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	1/0	t0004	952	13	0	6	1	3	2	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0005	952	11	9	2	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0006	952	8	1	1	2	0	4	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0007	952	6	5	1	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0008	951	5	5	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0009	951	4	4	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0010	951	3	0	0	3	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0011	952	1	0	1	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0012	951	1	0	0	1	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0013	952	1	0	1	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0014	951	1	0	0	1	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0015	952	1	0	1	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0016	952	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0017	951	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0018	951	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP100_chr17_81534891_81557353	0/0	t0019	952	1	1	0	0	0	0	copy fasta	FAAP100	chr17	81534891	81557353
FAAP20_chr1_2184548_2199772	0/1	t0001	185	250	34	46	125	11	33	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	1/0	t0002	185	89	32	16	27	5	8	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	0/0	t0003	157	38	19	2	13	0	4	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	0/0	t0004	185	5	5	0	0	0	0	copy fasta	FAAP20	chr1	2184548	2199772