JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAAP20_chr1_2184548_2199772	0/0	t0005	157	4	2	2	0	0	0	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	0/0	t0006	185	3	3	0	0	0	0	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	0/0	t0007	185	1	1	0	0	0	0	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	0/0	t0008	269	1	0	0	0	0	1	copy fasta	FAAP20	chr1	2184548	2199772
FAAP20_chr1_2184548_2199772	0/0	t0009	159	1	0	0	1	0	0	copy fasta	FAAP20	chr1	2184548	2199772
FAAP24_chr19_32967242_32983229	0/1	t0001	1666	83	15	32	24	3	8	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0002	1666	68	1	3	60	2	2	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0003	1669	52	17	7	22	0	6	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0004	1667	36	0	3	19	2	12	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0005	1665	24	3	8	0	4	9	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0006	1667	22	0	3	17	0	2	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0007	1666	14	11	1	1	0	1	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0008	1667	10	0	0	10	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	1/0	t0009	1666	8	1	1	4	0	1	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0010	1667	8	0	2	4	2	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0011	1665	7	0	0	6	1	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0012	1667	6	4	1	0	0	1	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0013	1668	6	4	1	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0014	1669	6	0	0	6	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0015	1666	6	4	0	1	0	1	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0016	1666	5	5	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0017	1667	5	0	0	5	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0018	1666	4	0	2	0	0	2	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0019	1665	4	4	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0020	1669	3	0	2	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0021	1666	3	0	1	0	1	1	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0022	1666	3	1	2	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0023	1668	3	1	0	1	1	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0024	1667	3	3	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0025	1667	3	3	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0026	1667	2	0	1	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0027	1668	2	2	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0028	1666	2	0	0	2	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0029	1668	2	0	1	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0030	1669	2	0	0	1	0	1	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0031	1668	2	0	0	2	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0032	1668	1	0	1	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0033	1665	1	0	1	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0034	1666	1	0	0	0	1	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0035	1668	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0036	1667	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0037	1666	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0038	1668	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0039	1667	1	0	1	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0040	1665	1	0	1	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0041	1665	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0042	1666	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0043	1666	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0044	1666	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0045	1666	1	0	1	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229