JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAAP24_chr19_32967242_32983229	0/0	t0046	1666	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0047	1665	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0048	1666	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0049	1665	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0050	1666	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0051	1665	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0052	1678	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0053	1668	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0054	1666	1	0	0	0	1	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0055	1666	1	0	0	0	0	1	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0056	1667	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0057	1667	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0058	1666	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0059	1665	1	0	0	0	0	1	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0060	1666	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0061	1664	1	0	1	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0062	1667	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0063	1667	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0064	1667	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0065	1667	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0066	1667	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0067	1666	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0068	1665	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0069	1666	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0070	1667	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0071	1669	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0072	1669	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0073	1668	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0074	1669	1	0	1	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0075	1667	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0076	1667	1	0	0	0	0	1	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0077	1669	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0078	1668	1	0	0	1	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FAAP24_chr19_32967242_32983229	0/0	t0079	1666	1	1	0	0	0	0	copy fasta	FAAP24	chr19	32967242	32983229
FABP12_chr8_81519981_81538867	0/0	t0001	207	399	83	70	190	16	40	copy fasta	FABP12	chr8	81519981	81538867
FABP12_chr8_81519981_81538867	0/0	t0002	207	15	13	2	0	0	0	copy fasta	FABP12	chr8	81519981	81538867
FABP1_chr2_88117982_88133062	1/1	t0001	118	467	99	82	218	16	50	copy fasta	FABP1	chr2	88117982	88133062
FABP1_chr2_88117982_88133062	0/0	t0002	118	1	1	0	0	0	0	copy fasta	FABP1	chr2	88117982	88133062
FABP2_chr4_119312250_119327138	1/0	t0001	1828	211	33	37	108	7	25	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0002	1828	119	27	25	57	3	7	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/1	t0003	1828	41	15	3	10	6	6	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0004	1828	13	3	6	3	1	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0005	1828	8	0	0	8	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0006	1829	5	0	3	0	1	1	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0007	1828	4	4	0	0	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0008	1827	3	2	1	0	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0009	1828	3	3	0	0	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0010	1828	3	2	1	0	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0011	1828	2	0	2	0	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0012	1828	2	2	0	0	0	0	copy fasta	FABP2	chr4	119312250	119327138