JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FABP2_chr4_119312250_119327138	0/0	t0013	1828	1	1	0	0	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0014	1828	1	0	0	1	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0015	1828	1	0	0	1	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0016	1828	1	1	0	0	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0017	1828	1	1	0	0	0	0	copy fasta	FABP2	chr4	119312250	119327138
FABP2_chr4_119312250_119327138	0/0	t0018	1828	1	0	0	0	0	1	copy fasta	FABP2	chr4	119312250	119327138
FABP3_chr1_31360253_31378076	0/0	t0001	697	205	13	27	132	5	28	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	1/0	t0002	696	126	43	28	36	7	11	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/1	t0003	697	20	9	7	0	2	1	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	t0004	698	16	13	1	1	0	1	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	t0005	698	7	4	3	0	0	0	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	t0006	697	5	0	0	5	0	0	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	t0007	697	4	4	0	0	0	0	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	t0008	696	2	2	0	0	0	0	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	t0009	698	1	0	0	1	0	0	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	t0010	697	1	0	0	0	0	1	copy fasta	FABP3	chr1	31360253	31378076
FABP3_chr1_31360253_31378076	0/0	t0011	697	1	0	0	1	0	0	copy fasta	FABP3	chr1	31360253	31378076
FABP4_chr8_81473419_81488233	1/1	t0001	513	180	41	44	55	9	29	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	t0002	513	153	28	15	106	1	3	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	t0003	513	38	14	8	15	0	1	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	t0004	513	23	5	7	0	4	7	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	t0005	513	4	4	0	0	0	0	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	t0006	513	2	0	2	0	0	0	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	t0007	513	2	0	2	0	0	0	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	t0008	513	1	1	0	0	0	0	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	t0009	513	1	0	1	0	0	0	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	t0010	513	1	1	0	0	0	0	copy fasta	FABP4	chr8	81473419	81488233
FABP4_chr8_81473419_81488233	0/0	t0011	513	1	0	1	0	0	0	copy fasta	FABP4	chr8	81473419	81488233
FABP5_chr8_81275536_81289775	0/0	t0001	269	259	90	50	95	6	18	copy fasta	FABP5	chr8	81275536	81289775
FABP5_chr8_81275536_81289775	0/0	t0002	269	5	0	0	5	0	0	copy fasta	FABP5	chr8	81275536	81289775
FABP6_chr5_160224506_160243716	1/1	t0001	110	476	98	80	232	18	46	copy fasta	FABP6	chr5	160224506	160243716
FABP7_chr6_122774716_122789074	0/1	t0001	386	358	54	63	189	12	39	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	1/0	t0002	387	95	40	18	21	6	9	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	t0003	386	19	0	0	19	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	t0004	386	3	3	0	0	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	t0005	386	2	1	1	0	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	t0006	387	1	0	0	1	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	t0007	387	1	0	0	1	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP7_chr6_122774716_122789074	0/0	t0008	386	1	0	0	1	0	0	copy fasta	FABP7	chr6	122774716	122789074
FABP9_chr8_81453253_81466579	1/1	t0001	187	427	96	81	196	10	42	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	t0002	187	2	0	0	2	0	0	copy fasta	FABP9	chr8	81453253	81466579
FABP9_chr8_81453253_81466579	0/0	t0003	187	1	0	1	0	0	0	copy fasta	FABP9	chr8	81453253	81466579
FADD_chr11_70198296_70212390	1/1	t0001	1082	163	38	31	55	10	27	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0002	1085	163	23	46	75	5	14	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0003	1082	20	20	0	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0004	1085	19	5	1	11	0	2	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0005	1085	8	0	0	8	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0006	1082	7	1	1	5	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0007	1085	6	0	0	6	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0008	1085	3	0	1	0	2	0	copy fasta	FADD	chr11	70198296	70212390