Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AIRE_chr21_44280876_44303648	0/0	t0005	1053	5	4	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0006	1053	2	2	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0007	1053	2	0	0	0	0	2	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0008	1053	2	2	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0009	1053	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0010	1053	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0011	1053	1	1	0	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0012	1053	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0013	1053	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0014	1053	1	0	0	0	0	1	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0015	1053	1	0	1	0	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0016	1053	1	0	0	1	0	0	copy fasta	AIRE	chr21	44280876	44303648
AIRE_chr21_44280876_44303648	0/0	t0017	1053	1	0	0	0	0	1	copy fasta	AIRE	chr21	44280876	44303648
AJAP1_chr1_4649609_4797534	0/0	t0001	10863	15	0	0	15	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0002	10863	13	0	0	12	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0003	10861	11	2	1	8	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0004	10864	9	0	9	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0005	10864	8	5	0	0	0	3	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0006	10856	8	0	3	5	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0007	10861	6	0	1	5	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0008	10856	5	0	1	3	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0009	10854	5	0	0	5	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0010	10864	4	1	0	0	0	3	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0011	10853	4	4	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0012	10854	4	4	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0013	10858	4	3	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0014	10854	4	0	0	4	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0015	10856	3	3	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0016	10870	3	2	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	1/0	t0017	10867	3	0	0	1	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0018	10852	3	0	1	0	0	2	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0019	10868	3	1	1	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0020	10866	3	0	2	0	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0021	10864	3	0	2	0	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0022	10863	3	0	2	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0023	10854	2	0	0	2	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0024	10862	2	0	0	0	0	2	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0025	10870	2	0	1	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0026	10864	2	2	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0027	10866	2	0	0	0	2	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0028	10858	2	1	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0029	10858	2	0	2	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0030	10872	2	2	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0031	10864	2	0	2	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0032	10858	2	1	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0033	10869	2	2	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0034	10862	2	0	0	0	0	2	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0035	10863	2	2	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0036	10863	2	0	0	2	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0037	10854	2	0	0	2	0	0	copy fasta	AJAP1	chr1	4649609	4797534