JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FADD_chr11_70198296_70212390	0/0	t0009	1082	2	2	0	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0010	1082	2	2	0	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0011	1082	1	0	0	0	0	1	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0012	1085	1	1	0	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0013	1085	1	1	0	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0014	1082	1	0	1	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0015	1082	1	0	0	1	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0016	1082	1	1	0	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0017	1082	1	0	1	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0018	1085	1	0	0	0	0	1	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0019	1085	1	1	0	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0020	1085	1	0	0	1	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0021	1082	1	1	0	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0022	1085	1	1	0	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0023	1085	1	0	0	0	1	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0024	1085	1	1	0	0	0	0	copy fasta	FADD	chr11	70198296	70212390
FADD_chr11_70198296_70212390	0/0	t0025	1082	1	0	0	0	0	1	copy fasta	FADD	chr11	70198296	70212390
FADS1_chr11_61794627_61822003	1/1	t0001	2859	129	43	24	43	5	12	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0002	2860	107	3	25	65	5	9	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0003	2860	7	6	1	0	0	0	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0004	2860	6	0	0	2	3	1	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0005	2859	5	0	4	1	0	0	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0006	2859	5	5	0	0	0	0	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0007	2858	5	1	1	2	0	1	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0008	2860	2	0	1	0	1	0	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0009	2860	2	2	0	0	0	0	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0010	2860	1	1	0	0	0	0	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0011	2859	1	0	0	0	0	1	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0012	2859	1	1	0	0	0	0	copy fasta	FADS1	chr11	61794627	61822003
FADS1_chr11_61794627_61822003	0/0	t0013	2859	1	0	0	1	0	0	copy fasta	FADS1	chr11	61794627	61822003
FADS2_chr11_61823300_61872354	1/0	t0001	1757	226	52	42	102	8	21	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0002	1757	17	8	7	0	2	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0003	1757	8	7	1	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0004	1757	6	4	2	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/1	t0005	1757	5	1	1	0	2	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0006	1757	4	3	1	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0007	1757	4	0	0	3	0	1	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0008	1757	3	3	0	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0009	1757	2	2	0	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0010	1757	1	1	0	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0011	1757	1	1	0	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0012	1757	1	1	0	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0013	1757	1	0	0	1	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS2_chr11_61823300_61872354	0/0	t0014	1757	1	1	0	0	0	0	copy fasta	FADS2	chr11	61823300	61872354
FADS3_chr11_61868526_61896545	0/1	t0001	453	407	94	70	186	13	43	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	1/0	t0002	453	7	6	0	0	0	0	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	t0003	453	1	0	0	1	0	0	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	t0004	453	1	0	0	0	0	1	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	t0005	453	1	0	0	1	0	0	copy fasta	FADS3	chr11	61868526	61896545
FADS3_chr11_61868526_61896545	0/0	t0006	453	1	0	0	0	1	0	copy fasta	FADS3	chr11	61868526	61896545