JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FADS6_chr17_74872302_74898633	0/0	t0001	1068	254	47	52	111	11	33	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	1/0	t0002	1068	108	6	14	68	5	14	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0003	1066	21	10	0	9	0	2	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0004	1067	21	20	1	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/1	t0005	1067	11	2	7	0	1	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0006	1067	5	4	1	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0007	1067	3	2	1	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0008	1068	3	3	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0009	1068	2	0	0	1	1	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0010	1066	2	0	0	2	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0011	1067	2	0	0	2	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0012	1068	1	0	0	1	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0013	1066	1	0	0	1	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0014	1067	1	0	0	1	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0015	1068	1	0	0	1	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0016	1066	1	1	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0017	1068	1	1	0	0	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0018	1087	1	0	0	1	0	0	copy fasta	FADS6	chr17	74872302	74898633
FADS6_chr17_74872302_74898633	0/0	t0019	1068	1	0	0	0	0	1	copy fasta	FADS6	chr17	74872302	74898633
FAF1_chr1_50432028_50965267	1/1	t0001	4869	51	14	8	19	2	6	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0002	4871	22	8	8	0	2	4	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0003	4871	19	3	4	11	1	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0004	4870	10	10	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0005	4868	7	3	0	4	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0006	4870	7	3	2	2	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0007	4870	6	5	1	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0008	4872	6	4	2	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0009	4868	5	1	0	3	0	1	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0010	4870	4	4	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0011	4870	4	0	1	3	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0012	4870	4	4	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0013	4871	4	4	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0014	4869	3	0	2	1	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0015	4869	3	0	2	0	1	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0016	4870	3	1	0	0	2	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0017	4872	3	0	0	3	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0018	4869	2	0	2	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0019	4870	2	0	1	0	0	1	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0020	4870	2	2	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0021	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0022	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0023	4879	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0024	4869	1	0	0	0	0	1	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0025	4870	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0026	4871	1	0	0	1	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0027	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0028	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0029	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0030	4869	1	0	0	1	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0031	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267