JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAF1_chr1_50432028_50965267	0/0	t0032	4871	1	0	1	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0033	4869	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0034	4870	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0035	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0036	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0037	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0038	4873	1	0	0	0	0	1	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0039	4870	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0040	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0041	4871	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0042	4870	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF1_chr1_50432028_50965267	0/0	t0043	4869	1	1	0	0	0	0	copy fasta	FAF1	chr1	50432028	50965267
FAF2_chr5_176443385_176515074	0/1	t0001	3148	107	5	24	56	3	18	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	1/0	t0002	3148	62	5	9	34	4	9	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0003	3149	56	1	10	36	0	9	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0004	3148	46	38	7	1	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0005	3148	29	1	2	24	1	1	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0006	3148	22	13	5	1	2	1	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0007	3150	7	4	3	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0008	3152	5	0	0	5	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0009	3149	4	3	1	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0010	3148	4	4	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0011	3148	3	0	0	3	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0012	3148	2	0	0	2	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0013	3148	2	2	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0014	3148	2	2	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0015	3149	2	0	0	2	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0016	3148	1	0	0	1	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0017	3148	1	0	1	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0018	3148	1	0	1	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0019	3148	1	0	0	1	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0020	3149	1	0	0	1	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0021	3148	1	0	1	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0022	3148	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0023	3148	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0024	3148	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0025	3148	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0026	3149	1	0	0	1	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0027	3149	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0028	3149	1	0	0	0	0	1	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0029	3150	1	0	0	1	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0030	3148	1	0	0	1	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0031	3148	1	0	0	0	0	1	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0032	3149	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0033	3148	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAF2_chr5_176443385_176515074	0/0	t0034	3148	1	1	0	0	0	0	copy fasta	FAF2	chr5	176443385	176515074
FAHD1_chr16_1822206_1833910	0/0	t0001	1041	248	49	39	121	11	28	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0002	1041	60	1	19	35	1	4	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0003	1040	45	0	3	34	1	7	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0004	1041	17	17	0	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910