JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAHD1_chr16_1822206_1833910	1/0	t0005	1040	16	8	3	4	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0006	1042	15	2	3	9	0	1	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/1	t0007	1040	15	7	4	0	0	3	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0008	1042	6	0	0	5	0	1	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0009	1041	5	0	0	2	0	3	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0010	1041	3	0	2	0	1	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0011	1041	3	0	2	0	1	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0012	1041	2	2	0	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0013	1041	2	2	0	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0014	1041	2	0	0	2	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0015	1041	1	0	0	1	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0016	1040	1	0	0	0	1	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0017	1041	1	0	0	0	0	1	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0018	1040	1	1	0	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0019	1040	1	1	0	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0020	1041	1	0	1	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0021	1041	1	0	0	1	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0022	1040	1	1	0	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD1_chr16_1822206_1833910	0/0	t0023	1041	1	1	0	0	0	0	copy fasta	FAHD1	chr16	1822206	1833910
FAHD2A_chr2_95397708_95421616	1/1	t0001	3831	183	46	26	77	4	28	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0002	3831	98	7	34	46	4	7	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0003	3831	22	0	0	21	1	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0004	3830	6	0	1	5	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0005	3831	5	0	0	5	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0006	3831	3	0	2	0	1	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0007	3831	3	3	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0008	3831	3	0	0	3	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0009	3831	2	2	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0010	3831	2	1	1	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0011	3831	2	0	0	0	1	1	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0012	3831	2	0	0	2	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0013	3831	2	2	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0014	3831	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0015	3831	1	1	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0016	3831	1	1	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0017	3831	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0018	3831	1	1	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0019	3831	1	1	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0020	3831	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0021	3831	1	0	0	0	1	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0022	3830	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0023	3831	1	0	0	0	0	1	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0024	3831	1	0	1	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0025	3831	1	0	0	0	0	1	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0026	3831	1	1	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0027	3831	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0028	3831	1	0	1	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0029	3831	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0030	3831	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0031	3831	1	1	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616