JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAHD2A_chr2_95397708_95421616	0/0	t0032	3831	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0033	3831	1	1	0	0	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2A_chr2_95397708_95421616	0/0	t0034	3831	1	0	0	1	0	0	copy fasta	FAHD2A	chr2	95397708	95421616
FAHD2B_chr2_97078583_97099882	1/1	t0001	487	399	95	72	172	18	40	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	t0002	487	8	0	0	8	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	t0003	487	2	2	0	0	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	t0004	487	2	0	0	2	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	t0005	487	2	2	0	0	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAHD2B_chr2_97078583_97099882	0/0	t0006	487	1	1	0	0	0	0	copy fasta	FAHD2B	chr2	97078583	97099882
FAH_chr15_80147999_80191349	1/1	t0001	197	349	90	66	144	16	31	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	t0002	197	40	0	5	27	0	8	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	t0003	196	38	4	7	18	0	9	copy fasta	FAH	chr15	80147999	80191349
FAH_chr15_80147999_80191349	0/0	t0004	197	1	0	0	1	0	0	copy fasta	FAH	chr15	80147999	80191349
FAIM2_chr12_49861896_49908900	0/0	t0001	3717	52	14	1	34	1	2	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0002	3717	51	0	8	35	5	3	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0003	3717	32	1	10	12	4	5	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0004	3717	31	4	2	23	0	2	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0005	3717	30	0	5	19	0	6	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0006	3717	29	1	9	17	0	2	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0007	3717	23	0	2	18	0	3	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0008	3717	20	1	2	12	2	3	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0009	3717	16	12	0	3	0	1	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0010	3717	14	0	6	4	0	4	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0011	3717	13	0	2	7	1	3	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/1	t0012	3717	13	2	2	1	2	5	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	1/0	t0013	3717	9	2	2	1	1	2	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0014	3717	6	5	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0015	3717	5	2	3	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0016	3713	5	5	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0017	3717	4	4	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0018	3717	4	0	0	4	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0019	3717	4	4	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0020	3717	4	4	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0021	3717	4	1	0	2	1	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0022	3717	3	3	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0023	3717	3	2	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0024	3717	3	3	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0025	3717	3	0	3	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0026	3717	3	0	0	3	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0027	3717	2	2	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0028	3717	2	2	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0029	3717	2	2	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0030	3717	2	2	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0031	3717	2	0	0	2	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0032	3717	2	0	2	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0033	3717	2	2	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0034	3713	2	2	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0035	3717	2	2	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0036	3717	2	0	0	0	0	2	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0037	3717	1	0	0	0	0	1	copy fasta	FAIM2	chr12	49861896	49908900