JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAIM2_chr12_49861896_49908900	0/0	t0038	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0039	3717	1	0	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0040	3717	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0041	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0042	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0043	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0044	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0045	3717	1	0	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0046	3717	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0047	3717	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0048	3717	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0049	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0050	3717	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0051	3717	1	0	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0052	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0053	3717	1	0	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0054	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0055	3717	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0056	3717	1	0	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0057	3717	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0058	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0059	3717	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0060	3717	1	0	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0061	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0062	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0063	3717	1	1	0	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0064	3717	1	0	0	0	0	1	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0065	3717	1	0	0	1	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0066	3717	1	0	0	0	1	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0067	3717	1	0	0	0	0	1	copy fasta	FAIM2	chr12	49861896	49908900
FAIM2_chr12_49861896_49908900	0/0	t0068	3717	1	0	1	0	0	0	copy fasta	FAIM2	chr12	49861896	49908900
FAIM_chr3_138603771_138638376	1/1	t0001	481	356	87	70	137	14	46	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	t0002	485	4	4	0	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	t0003	481	2	1	1	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	t0004	481	1	0	0	1	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	t0005	481	1	0	0	0	0	1	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	t0006	481	1	1	0	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	t0007	481	1	0	1	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	t0008	481	1	1	0	0	0	0	copy fasta	FAIM	chr3	138603771	138638376
FAIM_chr3_138603771_138638376	0/0	t0009	481	1	0	0	0	0	1	copy fasta	FAIM	chr3	138603771	138638376
FAM104A_chr17_73202365_73237394	0/1	t0001	2253	265	46	57	123	10	28	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	1/0	t0002	2253	87	31	10	37	0	8	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0003	2253	11	3	5	0	1	2	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0004	2253	6	0	0	5	0	1	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0005	2250	6	6	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0006	2253	5	4	1	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0007	2253	2	2	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0008	2253	2	0	0	2	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0009	2253	2	2	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0010	2253	1	1	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394