JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM104A_chr17_73202365_73237394	0/0	t0011	2253	1	1	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0012	2253	1	0	1	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0013	2253	1	0	1	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0014	2253	1	0	0	1	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0015	2253	1	1	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0016	2253	1	1	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0017	2253	1	1	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0018	2253	1	0	0	1	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0019	2253	1	0	0	1	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0020	2253	1	0	0	0	1	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0021	2253	1	1	0	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0022	2253	1	0	1	0	0	0	copy fasta	FAM104A	chr17	73202365	73237394
FAM104A_chr17_73202365_73237394	0/0	t0023	2253	1	0	0	0	0	1	copy fasta	FAM104A	chr17	73202365	73237394
FAM104B_chrX_55138102_55166185	0/0	t0001	3010	131	17	15	69	4	26	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	1/1	t0002	3012	128	38	22	53	7	6	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0003	3018	11	10	1	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0004	3009	6	6	0	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0005	3010	4	0	4	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0006	3013	3	1	0	2	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0007	3010	2	0	0	2	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0008	3010	1	0	1	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0009	3014	1	0	0	1	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0010	3014	1	1	0	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0011	3012	1	0	0	1	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0012	3012	1	1	0	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0013	3010	1	1	0	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0014	3010	1	0	1	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0015	3010	1	1	0	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0016	3010	1	1	0	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0017	3010	1	0	0	1	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM104B_chrX_55138102_55166185	0/0	t0018	3009	1	1	0	0	0	0	copy fasta	FAM104B	chrX	55138102	55166185
FAM107A_chr3_58559117_58582391	0/1	t0001	2560	112	13	42	34	6	16	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0002	2561	86	8	5	53	5	15	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0003	2561	18	0	0	18	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0004	2562	18	1	1	12	0	4	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0005	2561	18	7	2	4	1	4	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0006	2560	13	0	1	9	0	3	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0007	2554	10	7	3	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0008	2555	9	0	0	9	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0009	2561	7	0	5	2	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0010	2556	7	0	0	7	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0011	2555	7	1	0	6	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0012	2554	7	6	0	1	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0013	2555	6	0	2	3	0	1	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0014	2546	6	3	3	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0015	2560	6	2	0	4	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	1/0	t0016	2560	5	4	0	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0017	2562	5	3	0	0	0	2	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0018	2559	5	0	1	4	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0019	2555	5	3	2	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391