JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	tseq	genename	chr	start	end
FAM107A_chr3_58559117_58582391	0/0	t0020	2561	4	2	0	2	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0021	2553	3	3	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0022	2554	3	2	1	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0023	2553	3	3	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0024	2562	3	0	0	3	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0025	2555	2	0	1	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0026	2560	2	0	1	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0027	2554	2	2	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0028	2556	2	0	0	2	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0029	2553	2	2	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0030	2554	2	2	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0031	2561	2	0	1	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0032	2560	2	0	0	2	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0033	2561	2	0	0	2	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0034	2555	2	2	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0035	2560	2	2	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0036	2560	2	0	0	0	2	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0037	2561	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0038	2560	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0039	2547	1	0	1	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0040	2555	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0041	2562	1	0	1	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0042	2560	1	0	1	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0043	2555	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0044	2554	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0045	2562	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0046	2554	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0047	2559	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0048	2561	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0049	2561	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0050	2555	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0051	2554	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0052	2559	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0053	2546	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0054	2553	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0055	2554	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0056	2562	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0057	2555	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0058	2562	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0059	2546	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0060	2560	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0061	2560	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0062	2556	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0063	2554	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0064	2562	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0065	2560	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0066	2559	1	0	0	1	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0067	2554	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0068	2560	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0069	2559	1	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391