JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM107A_chr3_58559117_58582391	0/0	t0070	2553	1	0	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0071	2562	1	0	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0072	2561	1	0	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0073	2562	1	0	0	1	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0074	2556	1	0	0	1	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0075	2560	1	0	0	1	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0076	2546	1	1	0	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0077	2545	1	0	1	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0078	2555	1	0	0	0	0	1	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0079	2554	1	1	0	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0080	2555	1	0	0	1	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0081	2554	1	1	0	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0082	2554	1	1	0	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0083	2562	1	0	0	1	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107A_chr3_58559117_58582391	0/0	t0084	2555	1	1	0	0	0	0	copy fasta	FAM107A	chr3	58559117	58582391
FAM107B_chr10_14513557_14779897	0/0	t0001	2868	79	14	20	36	3	6	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/1	t0002	2868	64	19	3	31	2	8	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	1/0	t0003	2868	47	19	8	13	1	5	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0004	2868	12	1	5	2	1	3	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0005	2868	9	3	3	0	0	3	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0006	2868	8	0	1	7	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0007	2868	7	0	0	7	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0008	2868	6	1	1	2	0	2	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0009	2868	5	5	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0010	2868	5	0	0	4	0	1	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0011	2868	3	3	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0012	2868	3	0	3	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0013	2868	2	2	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0014	2868	2	0	0	2	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0015	2868	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0016	2868	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0017	2868	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0018	2868	1	0	0	1	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0019	2868	1	0	0	0	0	1	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0020	2868	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0021	2868	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0022	2868	1	0	0	1	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0023	2868	1	0	0	1	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0024	2868	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0025	2868	1	0	0	1	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0026	2894	1	0	0	0	1	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0027	2868	1	0	0	1	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0028	2868	1	0	0	0	0	1	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0029	2868	1	0	1	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0030	2868	1	0	1	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0031	2868	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0032	2868	1	0	0	1	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0033	2868	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM107B_chr10_14513557_14779897	0/0	t0034	2868	1	1	0	0	0	0	copy fasta	FAM107B	chr10	14513557	14779897
FAM110A_chr20_828715_851277	0/0	t0001	920	165	3	48	98	3	13	copy fasta	FAM110A	chr20	828715	851277