JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM110A_chr20_828715_851277	0/0	t0002	917	56	3	4	37	3	9	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0003	920	48	5	7	27	4	5	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0004	920	38	2	5	28	0	3	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0005	920	19	11	3	2	0	3	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	1/0	t0006	920	18	13	0	2	0	2	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0007	920	15	13	2	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0008	920	11	7	1	0	0	3	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0009	917	10	6	4	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0010	917	7	2	0	4	0	1	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0011	920	7	5	0	0	0	2	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0012	920	4	0	0	3	0	1	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0013	917	4	4	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0014	917	3	2	0	0	0	1	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0015	920	2	2	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0016	920	2	1	1	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0017	920	2	2	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0018	920	2	1	1	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0019	917	2	1	1	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0020	920	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0021	917	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/1	t0022	917	1	0	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0023	920	1	0	0	1	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0024	899	1	0	0	1	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0025	917	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0026	917	1	0	0	1	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0027	920	1	0	0	1	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0028	920	1	0	0	0	0	1	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0029	917	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0030	917	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0031	920	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0032	920	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0033	917	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0034	920	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0035	920	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0036	917	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0037	917	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0038	920	1	1	0	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0039	920	1	0	0	1	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110A_chr20_828715_851277	0/0	t0040	920	1	0	1	0	0	0	copy fasta	FAM110A	chr20	828715	851277
FAM110B_chr8_57989523_58153784	0/1	t0001	2237	72	11	13	35	5	7	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	1/0	t0002	2237	64	18	12	25	3	5	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0003	2237	60	27	4	25	1	3	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0004	2238	17	1	5	9	0	2	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0005	2238	15	3	2	9	0	1	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0006	2237	12	0	9	0	2	1	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0007	2236	9	8	1	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0008	2237	7	6	1	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0009	2238	7	2	1	3	0	1	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0010	2237	5	5	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0011	2237	3	0	2	0	0	1	copy fasta	FAM110B	chr8	57989523	58153784