Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AJAP1_chr1_4649609_4797534	0/0	t0038	10872	2	0	0	2	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0039	10866	2	0	0	0	0	2	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0040	10867	2	0	1	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0041	10865	2	0	2	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0042	10852	2	0	1	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0043	10863	2	1	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0044	10844	2	2	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0045	10864	2	1	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0046	10856	2	0	0	2	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0047	10864	2	2	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0048	10863	2	0	0	2	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0049	10856	2	0	0	2	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0050	10864	2	0	0	0	2	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0051	10868	1	0	0	0	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0052	10870	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0053	10866	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0054	10856	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0055	10865	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0056	10856	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0057	10850	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0058	10856	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0059	10864	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0060	10870	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0061	10870	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0062	10873	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0063	10870	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0064	10875	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0065	10870	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0066	10866	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0067	10860	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0068	10860	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0069	10869	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0070	10865	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0071	10856	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0072	10864	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0073	10860	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0074	10857	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0075	10852	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0076	10844	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0077	10844	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0078	10856	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0079	10856	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0080	10854	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0081	10854	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0082	10874	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0083	10866	1	0	0	0	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0084	10872	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0085	10870	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0086	10862	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0087	10854	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534