JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM110B_chr8_57989523_58153784	0/0	t0012	2237	2	2	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0013	2237	2	0	0	2	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0014	2237	2	0	0	2	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0015	2236	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0016	2236	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0017	2237	1	0	0	1	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0018	2237	1	0	0	1	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0019	2236	1	0	0	1	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0020	2238	1	0	1	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0021	2237	1	0	0	0	1	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0022	2226	1	0	1	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0023	2237	1	0	0	0	0	1	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0024	2236	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0025	2238	1	0	0	0	0	1	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0026	2237	1	0	0	1	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0027	2236	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0028	2238	1	0	0	1	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0029	2237	1	0	0	1	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0030	2236	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0031	2236	1	0	1	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0032	2237	1	0	0	0	0	1	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0033	2237	1	0	0	1	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0034	2237	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0035	2237	1	1	0	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0036	2237	1	0	1	0	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110B_chr8_57989523_58153784	0/0	t0037	2237	1	0	0	1	0	0	copy fasta	FAM110B	chr8	57989523	58153784
FAM110C_chr2_33814_51505	1/0	t0001	2915	225	27	35	121	11	30	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0002	2915	59	12	6	41	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0003	2915	38	0	5	33	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0004	2915	34	0	13	11	3	7	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0005	2915	17	8	1	1	0	7	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/1	t0006	2915	14	10	2	0	0	1	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0007	2915	7	7	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0008	2915	6	0	3	0	2	1	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0009	2919	5	0	5	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0010	2915	4	4	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0011	2915	4	4	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0012	2915	3	3	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0013	2915	3	3	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0014	2915	3	3	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0015	2915	3	3	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0016	2915	2	0	0	2	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0017	2915	2	0	0	2	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0018	2915	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0019	2915	1	0	0	1	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0020	2915	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0021	2915	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0022	2915	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0023	2915	1	0	0	0	0	1	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0024	2915	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505