JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM110C_chr2_33814_51505	0/0	t0025	2915	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0026	2915	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0027	2915	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0028	2915	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0029	2915	1	1	0	0	0	0	copy fasta	FAM110C	chr2	33814	51505
FAM110C_chr2_33814_51505	0/0	t0030	2915	1	0	0	0	0	1	copy fasta	FAM110C	chr2	33814	51505
FAM110D_chr1_26154079_26168962	0/0	t0001	1658	131	7	23	88	2	11	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0002	1656	85	7	21	46	4	7	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0003	1973	48	11	7	16	1	13	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	1/0	t0004	1984	26	11	4	1	6	3	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0005	1658	23	13	6	1	0	3	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/1	t0006	1985	17	10	4	0	1	1	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0007	1658	12	0	2	9	0	1	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0008	1984	10	9	0	1	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0009	1985	10	9	1	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0010	1974	9	0	2	6	0	1	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0011	1658	6	6	0	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0012	1658	5	0	0	5	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0013	1983	5	5	0	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0014	1658	4	4	0	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0015	1985	4	3	1	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0016	1658	3	3	0	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0017	1984	2	0	2	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0018	1983	2	0	2	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0019	1656	1	0	0	1	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0020	1658	1	0	0	1	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0021	1656	1	0	0	1	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0022	1658	1	0	1	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0023	1984	1	0	1	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0024	1974	1	1	0	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0025	1984	1	1	0	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0026	1985	1	0	1	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0027	1658	1	0	1	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM110D_chr1_26154079_26168962	0/0	t0028	1658	1	0	1	0	0	0	copy fasta	FAM110D	chr1	26154079	26168962
FAM111A_chr11_59137856_59160039	1/1	t0001	2154	245	43	46	112	12	30	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0002	2152	91	6	28	42	4	11	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0003	2156	38	10	1	26	0	1	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0004	2153	22	13	5	3	1	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0005	2153	8	8	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0006	2155	7	0	0	7	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0007	2155	5	0	0	4	0	1	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0008	2155	5	5	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0009	2159	4	4	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0010	2150	3	0	0	3	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0011	2154	3	3	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0012	2161	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0013	2151	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0014	2159	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0015	2154	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0016	2152	1	0	0	0	0	1	copy fasta	FAM111A	chr11	59137856	59160039