JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM111A_chr11_59137856_59160039	0/0	t0017	2154	1	0	0	1	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0018	2153	1	0	0	1	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0019	2160	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0020	2154	1	0	0	1	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0021	2154	1	0	0	0	1	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111A_chr11_59137856_59160039	0/0	t0022	2154	1	1	0	0	0	0	copy fasta	FAM111A	chr11	59137856	59160039
FAM111B_chr11_59102237_59132412	1/1	t0001	1302	239	46	41	114	10	26	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	t0002	1302	75	7	22	30	4	12	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	t0003	1302	60	18	7	34	0	1	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	t0004	1302	14	0	0	14	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	t0005	1288	8	8	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	t0006	1302	7	7	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	t0007	1302	5	5	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	t0008	1302	3	3	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	t0009	1302	1	1	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	t0010	1302	1	1	0	0	0	0	copy fasta	FAM111B	chr11	59102237	59132412
FAM111B_chr11_59102237_59132412	0/0	t0011	1302	1	0	0	0	0	1	copy fasta	FAM111B	chr11	59102237	59132412
FAM114A1_chr4_38862806_38950739	1/1	t0001	2369	86	12	26	34	2	10	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0002	2373	83	15	13	39	1	15	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0003	2368	32	5	8	13	1	5	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0004	2368	25	3	3	12	3	4	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0005	2373	24	23	1	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0006	2368	21	0	4	17	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0007	2369	15	3	1	10	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0008	2368	9	0	0	9	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0009	2367	7	0	4	0	0	3	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0010	2368	7	6	0	0	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0011	2367	6	4	1	0	1	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0012	2374	6	3	1	1	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0013	2370	4	0	0	2	1	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0014	2373	4	4	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0015	2367	3	0	2	0	1	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0016	2369	3	1	1	0	0	1	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0017	2369	3	0	0	3	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0018	2368	2	0	0	2	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0019	2369	2	0	0	2	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0020	2368	2	0	0	2	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0021	2369	2	0	1	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0022	2373	2	2	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0023	2373	2	2	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0024	2374	2	2	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0025	2368	1	0	1	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0026	2368	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0027	2368	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0028	2369	1	0	1	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0029	2369	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0030	2369	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0031	2373	1	0	0	1	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0032	2373	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739
FAM114A1_chr4_38862806_38950739	0/0	t0033	2373	1	1	0	0	0	0	copy fasta	FAM114A1	chr4	38862806	38950739