JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM114A2_chr5_153985148_154043910	0/0	t0040	2895	1	0	0	1	0	0	copy fasta	FAM114A2	chr5	153985148	154043910
FAM117A_chr17_49705332_49769131	1/1	t0001	968	297	84	60	111	8	32	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	t0002	968	28	5	10	9	2	2	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	t0003	968	3	3	0	0	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	t0004	968	3	1	2	0	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	t0005	968	2	2	0	0	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	t0006	968	1	1	0	0	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	t0007	968	1	0	0	1	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117A_chr17_49705332_49769131	0/0	t0008	968	1	0	0	1	0	0	copy fasta	FAM117A	chr17	49705332	49769131
FAM117B_chr2_202629969_202774757	0/0	t0001	4213	33	2	9	17	1	4	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0002	4212	17	0	3	12	0	2	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0003	4200	9	5	4	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	1/0	t0004	4213	9	0	1	4	0	3	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0005	4215	8	1	3	4	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0006	4212	6	4	2	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0007	4211	6	1	1	3	0	1	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0008	4209	6	1	3	2	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0009	4211	5	3	0	0	0	2	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0010	4207	5	5	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0011	4209	5	0	1	4	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0012	4214	5	0	0	3	0	2	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/1	t0013	4209	5	0	2	0	0	2	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0014	4215	4	0	0	4	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0015	4210	4	0	2	2	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0016	4210	4	3	1	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0017	4214	4	0	3	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0018	4215	4	0	2	0	0	2	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0019	4212	4	0	0	4	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0020	4215	4	0	0	4	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0021	4213	4	0	0	2	0	2	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0022	4211	4	0	1	1	0	2	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0023	4211	4	0	2	0	1	1	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0024	4204	3	3	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0025	4222	3	1	0	2	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0026	4214	3	0	0	1	0	2	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0027	4212	3	3	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0028	4209	3	3	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0029	4204	3	3	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0030	4203	3	3	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0031	4229	3	0	0	3	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0032	4213	3	0	0	3	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0033	4192	3	0	0	3	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0034	4219	2	0	0	2	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0035	4216	2	2	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0036	4214	2	1	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0037	4226	2	0	2	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0038	4220	2	0	0	0	1	1	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0039	4211	2	1	1	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0040	4212	2	0	0	0	1	1	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0041	4211	2	2	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757