JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM117B_chr2_202629969_202774757	0/0	t0092	4213	1	0	1	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0093	4216	1	0	0	0	0	1	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0094	4208	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0095	4207	1	0	1	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0096	4203	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0097	4210	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0098	4211	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0099	4209	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0100	4208	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0101	4208	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0102	4209	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0103	4210	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0104	4205	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0105	4200	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0106	4200	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0107	4200	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0108	4211	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0109	4563	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0110	4211	1	0	1	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0111	4223	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0112	4217	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0113	4219	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0114	4213	1	0	0	0	0	1	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0115	4214	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0116	4214	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0117	4214	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0118	4210	1	0	1	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0119	4211	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0120	4218	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0121	4209	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0122	4211	1	0	0	0	0	1	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0123	4203	1	1	0	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0124	4207	1	0	0	0	0	1	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0125	4197	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0126	4194	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0127	4191	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0128	4232	1	0	1	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0129	4215	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0130	4215	1	0	0	0	0	1	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0131	4218	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0132	4214	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0133	4210	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0134	4207	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0135	4207	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0136	4205	1	0	1	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0137	4211	1	0	1	0	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0138	4215	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM117B_chr2_202629969_202774757	0/0	t0139	4212	1	0	0	1	0	0	copy fasta	FAM117B	chr2	202629969	202774757
FAM118A_chr22_45304934_45346955	0/1	t0001	1810	146	59	18	52	5	11	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0002	1810	125	4	34	61	11	15	copy fasta	FAM118A	chr22	45304934	45346955