JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM118A_chr22_45304934_45346955	1/0	t0003	1810	55	8	8	27	0	11	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0004	1810	53	9	12	28	1	3	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0005	1809	21	10	1	9	0	1	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0006	1810	3	0	0	3	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0007	1810	2	2	0	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0008	1810	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0009	1810	1	0	0	0	1	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0010	1810	1	0	0	0	0	1	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0011	1810	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0012	1810	1	1	0	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0013	1810	1	1	0	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0014	1810	1	1	0	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0015	1810	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0016	1810	1	0	1	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0017	1810	1	1	0	0	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118A_chr22_45304934_45346955	0/0	t0018	1810	1	0	0	1	0	0	copy fasta	FAM118A	chr22	45304934	45346955
FAM118B_chr11_126206782_126267968	1/1	t0001	961	328	75	63	130	16	42	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	t0002	961	8	8	0	0	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	t0003	961	3	0	0	3	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	t0004	961	2	2	0	0	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	t0005	961	2	0	0	2	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	t0006	961	1	0	0	1	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	t0007	961	1	0	1	0	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM118B_chr11_126206782_126267968	0/0	t0008	961	1	1	0	0	0	0	copy fasta	FAM118B	chr11	126206782	126267968
FAM120AOS_chr9_93438332_93458581	1/0	t0001	5152	84	4	14	49	4	12	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0002	5154	52	3	15	27	5	2	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0003	5153	22	0	3	16	0	3	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0004	5154	21	17	2	2	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0005	5154	20	0	3	17	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0006	5151	19	8	1	6	2	2	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0007	5156	16	0	9	6	0	1	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0008	5155	15	1	3	11	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0009	5153	15	7	2	4	0	2	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0010	5155	10	0	0	10	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0011	5152	10	9	1	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0012	5152	10	6	2	2	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/1	t0013	5153	8	0	5	0	2	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0014	5155	7	0	0	5	2	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0015	5155	6	5	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0016	5153	6	2	1	3	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0017	5154	6	1	0	5	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0018	5153	5	1	1	0	2	1	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0019	5151	4	4	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0020	5155	4	1	0	2	0	1	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0021	5154	4	0	0	4	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0022	5154	4	4	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0023	5152	3	3	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0024	5152	3	3	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0025	5153	3	3	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0026	5157	3	0	2	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581