JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM120AOS_chr9_93438332_93458581	0/0	t0027	5155	3	0	0	3	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0028	5152	3	2	1	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0029	5154	3	0	2	0	1	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0030	5153	2	0	0	2	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0031	5152	2	2	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0032	5152	2	0	2	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0033	5151	2	2	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0034	5156	2	0	0	2	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0035	5156	2	0	0	2	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0036	5152	2	2	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0037	5154	2	0	0	1	0	1	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0038	5152	2	2	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0039	5151	2	0	0	2	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0040	5155	2	2	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0041	5152	2	0	0	2	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0042	5154	2	0	0	2	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0043	5152	2	0	0	2	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0044	5152	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0045	5153	1	1	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0046	5152	1	1	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0047	5152	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0048	5152	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0049	5154	1	0	1	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0050	5154	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0051	5157	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0052	5154	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0053	5153	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0054	5153	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0055	5152	1	0	0	0	0	1	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0056	5152	1	0	0	0	0	1	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0057	5154	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0058	5152	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0059	5155	1	0	0	0	0	1	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0060	5154	1	0	1	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0061	5153	1	0	1	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0062	5155	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0063	5155	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0064	5152	1	0	1	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0065	5151	1	1	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0066	5154	1	0	1	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0067	5152	1	1	0	0	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120AOS_chr9_93438332_93458581	0/0	t0068	5154	1	0	0	1	0	0	copy fasta	FAM120AOS	chr9	93438332	93458581
FAM120A_chr9_93446685_93571112	0/0	t0001	1804	99	20	11	54	6	8	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/1	t0002	1804	99	43	23	25	4	3	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0003	1804	64	3	15	39	4	3	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0004	1805	10	0	2	7	0	1	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0005	1805	10	3	0	7	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0006	1803	7	7	0	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0007	1805	7	4	3	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	1/0	t0008	1804	7	1	1	0	2	2	copy fasta	FAM120A	chr9	93446685	93571112