JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM120A_chr9_93446685_93571112	0/0	t0009	1803	4	4	0	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0010	1803	2	2	0	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0011	1805	2	0	2	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0012	1805	2	0	1	0	0	1	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0013	1804	2	0	0	2	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0014	1806	1	0	0	1	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0015	1803	1	0	0	1	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120A_chr9_93446685_93571112	0/0	t0016	1804	1	1	0	0	0	0	copy fasta	FAM120A	chr9	93446685	93571112
FAM120B_chr6_170301758_170412067	0/0	t0001	2423	119	48	19	39	1	12	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0002	2423	41	1	10	24	1	5	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0003	2423	20	0	4	16	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0004	2423	15	2	7	1	1	4	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0005	2422	15	2	10	0	2	1	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/1	t0006	2422	14	0	6	1	0	6	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0007	2423	13	2	7	0	1	3	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0008	2423	9	0	0	9	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0009	2423	9	8	1	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0010	2423	6	5	1	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0011	2423	3	3	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0012	2423	3	3	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0013	2423	2	2	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0014	2422	2	0	0	0	1	1	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0015	2423	2	0	2	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0016	2423	2	0	2	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0017	2411	1	1	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0018	2411	1	1	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0019	2423	1	0	0	0	1	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0020	2422	1	0	1	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0021	2423	1	0	0	1	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0022	2423	1	0	1	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0023	2423	1	0	0	1	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0024	2423	1	1	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0025	2423	1	1	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0026	2422	1	0	0	0	0	1	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0027	2422	1	0	1	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0028	2423	1	1	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0029	2423	1	1	0	0	0	0	copy fasta	FAM120B	chr6	170301758	170412067
FAM120B_chr6_170301758_170412067	0/0	t0030	2423	1	0	0	0	0	1	copy fasta	FAM120B	chr6	170301758	170412067
FAM120C_chrX_54063324_54188254	0/0	t0001	4768	16	0	2	13	1	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/1	t0002	4753	11	0	1	9	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0003	4758	9	1	3	3	0	2	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0004	4766	7	0	5	2	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0005	4770	7	0	0	7	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0006	4754	6	0	0	6	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0007	4769	6	0	1	5	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0008	4751	6	2	0	4	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0009	4773	6	0	1	3	1	1	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0010	4772	6	0	0	6	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0011	4756	5	1	2	2	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0012	4756	5	0	0	2	0	3	copy fasta	FAM120C	chrX	54063324	54188254