JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM120C_chrX_54063324_54188254	0/0	t0063	4760	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0064	4775	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0065	4777	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0066	4762	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0067	4774	1	1	0	0	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0068	4764	1	0	0	0	0	1	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0069	4768	1	0	0	0	0	1	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0070	4763	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0071	4755	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0072	4769	1	1	0	0	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0073	4757	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0074	4755	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM120C_chrX_54063324_54188254	0/0	t0075	4756	1	0	0	1	0	0	copy fasta	FAM120C	chrX	54063324	54188254
FAM124A_chr13_51217398_51289239	0/0	t0001	3089	94	11	23	44	5	11	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	1/1	t0002	3088	92	12	15	49	7	7	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0003	3090	36	1	1	33	0	1	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0004	3090	31	5	8	11	0	7	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0005	3091	20	1	1	17	0	1	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0006	3093	17	1	2	6	2	6	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0007	3087	16	10	4	2	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0008	3081	10	8	2	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0009	3088	9	2	4	0	1	2	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0010	3091	8	2	0	6	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0011	3094	7	0	2	2	0	3	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0012	3090	7	7	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0013	3092	6	6	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0014	3091	4	4	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0015	3089	4	0	0	4	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0016	3092	3	1	0	2	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0017	3091	3	3	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0018	3091	3	3	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0019	3090	3	2	1	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0020	3100	2	2	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0021	3089	2	0	2	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0022	3093	2	2	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0023	3090	2	1	1	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0024	3081	2	2	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0025	3090	2	0	0	2	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0026	3092	2	1	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0027	3093	2	2	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0028	3091	1	0	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0029	3091	1	0	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0030	3087	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0031	3086	1	0	0	0	1	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0032	3087	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0033	3080	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0034	3090	1	0	0	0	0	1	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0035	3090	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0036	3088	1	0	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0037	3089	1	0	0	0	0	1	copy fasta	FAM124A	chr13	51217398	51289239