JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM124A_chr13_51217398_51289239	0/0	t0038	3093	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0039	3090	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0040	3088	1	0	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0041	3090	1	0	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0042	3091	1	0	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0043	3088	1	1	0	0	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124A_chr13_51217398_51289239	0/0	t0044	3092	1	0	0	1	0	0	copy fasta	FAM124A	chr13	51217398	51289239
FAM124B_chr2_224373698_224407107	1/0	t0001	1215	251	56	59	101	7	27	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0002	1215	79	4	11	51	3	10	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0003	1215	53	1	3	49	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/1	t0004	1215	42	26	6	0	2	7	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0005	1215	8	4	1	1	2	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0006	1215	2	2	0	0	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0007	1215	1	1	0	0	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0008	1215	1	1	0	0	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0009	1215	1	1	0	0	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0010	1215	1	1	0	0	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0011	1215	1	1	0	0	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0012	1215	1	0	0	1	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM124B_chr2_224373698_224407107	0/0	t0013	1215	1	0	0	1	0	0	copy fasta	FAM124B	chr2	224373698	224407107
FAM131A_chr3_184332600_184351275	0/0	t0001	1337	209	49	39	100	6	15	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	1/0	t0002	1337	93	2	12	65	3	10	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/1	t0003	1337	57	18	9	9	5	15	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0004	1337	44	9	4	28	1	2	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0005	1337	18	0	11	0	3	4	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0006	1337	8	8	0	0	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0007	1337	5	0	5	0	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0008	1337	3	0	0	3	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0009	1337	2	2	0	0	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0010	1337	2	0	0	2	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0011	1337	2	2	0	0	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0012	1337	2	2	0	0	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0013	1337	1	1	0	0	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0014	1337	1	1	0	0	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131A_chr3_184332600_184351275	0/0	t0015	1337	1	0	0	1	0	0	copy fasta	FAM131A	chr3	184332600	184351275
FAM131B_chr7_143348400_143367713	0/1	t0001	3261	299	65	52	131	12	38	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0002	3266	109	9	25	65	5	5	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0003	3262	13	5	0	8	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0004	3265	10	2	1	3	0	4	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0005	3261	3	3	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0006	3261	3	0	3	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0007	3261	2	0	0	2	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0008	3261	2	0	1	0	1	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0009	3261	2	1	1	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0010	3261	2	1	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0011	3261	2	0	0	2	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0012	3262	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0013	3261	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0014	3261	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0015	3261	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713