JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM131B_chr7_143348400_143367713	0/0	t0016	3261	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0017	3261	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0018	3266	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0019	3261	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0020	3261	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0021	3261	1	0	1	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0022	3261	1	0	0	0	0	1	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0023	3261	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0024	3266	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0025	3266	1	0	0	1	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0026	3266	1	0	0	0	0	1	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0027	3261	1	0	1	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0028	3261	1	0	1	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	1/0	t0029	3261	1	0	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0030	3261	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0031	3261	1	1	0	0	0	0	copy fasta	FAM131B	chr7	143348400	143367713
FAM131B_chr7_143348400_143367713	0/0	t0032	3261	1	0	0	0	0	1	copy fasta	FAM131B	chr7	143348400	143367713
FAM131C_chr1_16052769_16078651	0/0	t0001	878	128	4	21	89	0	14	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/1	t0002	878	61	19	24	1	9	7	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0003	878	45	21	14	0	4	6	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	1/0	t0004	878	25	3	1	18	1	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0005	878	19	1	4	11	0	3	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0006	878	19	0	0	19	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0007	878	12	11	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0008	878	9	3	4	0	1	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0009	878	7	3	3	0	1	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0010	878	6	6	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0011	878	6	5	0	0	0	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0012	878	5	4	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0013	878	4	4	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0014	878	4	0	0	0	0	4	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0015	878	2	2	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0016	878	2	2	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0017	878	2	0	0	2	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0018	878	2	1	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0019	908	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0020	878	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0021	878	1	0	0	1	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0022	878	1	0	0	1	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0023	878	1	0	0	0	0	1	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0024	878	1	0	0	1	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0025	878	1	0	1	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0026	878	1	0	0	1	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0027	878	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0028	878	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0029	878	1	0	0	1	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0030	878	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0031	878	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0032	878	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0033	878	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651