JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM131C_chr1_16052769_16078651	0/0	t0034	878	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0035	878	1	1	0	0	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM131C_chr1_16052769_16078651	0/0	t0036	878	1	0	0	1	0	0	copy fasta	FAM131C	chr1	16052769	16078651
FAM133A_chrX_93669206_93717265	1/1	t0001	2433	243	40	47	116	11	27	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0002	2433	24	15	3	4	0	2	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0003	2430	7	7	0	0	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0004	2433	6	6	0	0	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0005	2433	3	0	0	3	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0006	2433	3	0	0	3	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0007	2433	2	0	0	0	0	2	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0008	2433	1	0	0	1	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0009	2433	1	0	0	1	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0010	2433	1	0	0	1	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0011	2433	1	0	0	0	0	1	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0012	2433	1	1	0	0	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0013	2433	1	0	1	0	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0014	2433	1	1	0	0	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0015	2433	1	1	0	0	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0016	2433	1	0	0	1	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133A_chrX_93669206_93717265	0/0	t0017	2433	1	1	0	0	0	0	copy fasta	FAM133A	chrX	93669206	93717265
FAM133B_chr7_92555758_92595390	1/1	t0001	1624	214	54	34	86	7	31	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0002	1624	66	3	5	56	0	2	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0003	1628	15	0	5	6	3	1	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0004	1624	11	11	0	0	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0005	1629	7	6	0	1	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0006	1624	3	3	0	0	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0007	1625	2	0	0	2	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0008	1624	1	1	0	0	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0009	1624	1	1	0	0	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0010	1624	1	0	0	1	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0011	1628	1	0	1	0	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0012	1625	1	0	0	1	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0013	1624	1	0	1	0	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0014	1624	1	1	0	0	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0015	1629	1	1	0	0	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0016	1629	1	1	0	0	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM133B_chr7_92555758_92595390	0/0	t0017	1628	1	0	0	1	0	0	copy fasta	FAM133B	chr7	92555758	92595390
FAM135A_chr6_70408508_70566174	1/1	t0001	1668	166	46	39	50	10	19	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	t0002	1668	67	10	17	33	2	5	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	t0003	1668	27	26	1	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	t0004	1668	3	1	2	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	t0005	1668	2	2	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	t0006	1668	1	0	1	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	t0007	1668	1	1	0	0	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135A_chr6_70408508_70566174	0/0	t0008	1668	1	0	0	1	0	0	copy fasta	FAM135A	chr6	70408508	70566174
FAM135B_chr8_138125023_138502261	0/1	t0001	3181	64	7	21	22	5	8	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0002	3181	28	20	4	0	1	3	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0003	3181	20	2	1	12	0	5	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0004	3181	14	1	2	9	1	1	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0005	3181	13	6	0	4	0	3	copy fasta	FAM135B	chr8	138125023	138502261