JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM135B_chr8_138125023_138502261	0/0	t0006	3181	9	6	3	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	1/0	t0007	3181	8	1	4	0	0	2	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0008	3181	4	4	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0009	3181	4	3	1	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0010	3181	4	0	0	4	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0011	3181	3	3	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0012	3181	3	0	0	3	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0013	3181	3	1	1	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0014	3181	2	0	1	0	0	1	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0015	3181	2	2	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0016	3181	2	2	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0017	3181	2	2	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0018	3181	2	0	0	1	0	1	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0019	3181	2	2	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0020	3181	2	2	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0021	3181	2	2	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0022	3181	1	0	0	0	1	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0023	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0024	3181	1	0	0	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0025	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0026	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0027	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0028	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0029	3181	1	0	0	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0030	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0031	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0032	3502	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0033	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0034	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0035	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0036	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0037	3181	1	0	0	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0038	3181	1	0	0	1	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0039	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM135B_chr8_138125023_138502261	0/0	t0040	3181	1	1	0	0	0	0	copy fasta	FAM135B	chr8	138125023	138502261
FAM136A_chr2_70290976_70307067	0/0	t0001	1370	213	63	40	86	3	21	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	1/1	t0002	1370	141	4	29	78	8	20	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0003	1370	52	1	7	41	1	2	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0004	1369	16	15	1	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0005	1370	4	3	1	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0006	1370	4	4	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0007	1370	2	1	1	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0008	1397	2	2	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0009	1397	2	2	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0010	1370	1	0	1	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0011	1370	1	1	0	0	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0012	1370	1	0	0	1	0	0	copy fasta	FAM136A	chr2	70290976	70307067
FAM136A_chr2_70290976_70307067	0/0	t0013	1370	1	0	0	0	0	1	copy fasta	FAM136A	chr2	70290976	70307067
FAM13A_chr4_88720960_89062185	1/1	t0001	2795	37	5	11	14	2	3	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0002	2793	33	8	8	16	0	1	copy fasta	FAM13A	chr4	88720960	89062185