JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM13A_chr4_88720960_89062185	0/0	t0003	2795	28	2	8	18	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0004	2801	14	0	0	14	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0005	2795	11	3	5	0	2	1	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0006	2793	10	6	1	0	1	2	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0007	2797	7	2	1	1	0	3	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0008	2799	7	5	1	0	1	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0009	2800	6	5	1	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0010	2799	6	5	1	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0011	2799	6	3	2	0	0	1	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0012	2796	3	3	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0013	2792	3	3	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0014	2792	3	3	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0015	2795	3	0	1	2	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0016	2797	2	2	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0017	2797	2	0	0	0	0	2	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0018	2801	2	0	0	1	0	1	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0019	2800	2	2	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0020	2799	2	2	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0021	2799	2	2	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0022	2796	1	0	0	0	0	1	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0023	2796	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0024	2793	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0025	2801	1	0	0	1	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0026	2796	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0027	2795	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0028	2793	1	0	0	0	0	1	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0029	2795	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0030	2793	1	0	0	1	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0031	2799	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0032	2795	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0033	2795	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0034	2795	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0035	2795	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0036	2799	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0037	2800	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0038	2795	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0039	2795	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13A_chr4_88720960_89062185	0/0	t0040	2800	1	1	0	0	0	0	copy fasta	FAM13A	chr4	88720960	89062185
FAM13B_chr5_137932960_138038079	0/1	t0001	2766	203	43	52	80	6	21	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	1/0	t0002	2766	82	40	20	7	8	6	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0003	2766	16	0	1	14	0	1	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0004	2766	6	6	0	0	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0005	2788	2	0	0	2	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0006	2766	2	2	0	0	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0007	2766	2	0	2	0	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0008	2766	2	2	0	0	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0009	2766	1	1	0	0	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0010	2766	1	0	0	0	0	1	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0011	2766	1	0	1	0	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0012	2766	1	0	0	1	0	0	copy fasta	FAM13B	chr5	137932960	138038079