JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM13B_chr5_137932960_138038079	0/0	t0013	2766	1	0	0	1	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0014	2766	1	0	0	0	0	1	copy fasta	FAM13B	chr5	137932960	138038079
FAM13B_chr5_137932960_138038079	0/0	t0015	2766	1	0	0	1	0	0	copy fasta	FAM13B	chr5	137932960	138038079
FAM13C_chr10_59241133_59367549	0/1	t0001	1572	173	78	32	44	2	16	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	t0002	1572	22	1	0	15	0	6	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	1/0	t0003	1571	4	3	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	t0004	1572	1	0	1	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	t0005	1572	1	0	0	1	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	t0006	1572	1	0	1	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	t0007	1572	1	1	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM13C_chr10_59241133_59367549	0/0	t0008	1572	1	1	0	0	0	0	copy fasta	FAM13C	chr10	59241133	59367549
FAM149A_chr4_186099704_186180337	0/0	t0001	805	51	3	10	32	2	4	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0002	3717	47	1	9	28	3	6	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	1/0	t0003	3724	44	6	5	27	0	5	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0004	3710	41	1	4	29	1	6	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0005	3731	14	2	4	5	0	3	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0006	812	14	6	0	8	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/1	t0007	3717	12	0	7	2	1	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0008	816	11	3	6	2	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0009	3723	8	6	2	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0010	798	8	0	1	3	1	3	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0011	819	7	0	4	3	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0012	3710	7	0	0	7	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0013	823	6	6	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0014	3718	5	5	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0015	3738	4	1	0	2	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0016	819	4	0	1	2	1	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0017	3724	4	0	0	4	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0018	3717	4	0	0	4	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0019	3717	4	0	0	4	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0020	3718	4	3	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0021	833	3	0	1	0	1	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0022	3709	3	3	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0023	3745	2	1	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0024	830	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0025	826	2	1	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0026	3731	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0027	3731	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0028	3732	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0029	3731	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0030	3724	2	0	2	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0031	3723	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0032	3725	2	1	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0033	3725	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0034	812	2	0	0	2	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0035	3717	2	2	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0036	3716	2	1	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0037	3711	2	1	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0038	3710	2	0	2	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0039	3767	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337