JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM149A_chr4_186099704_186180337	0/0	t0040	3767	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0041	851	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0042	3753	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0043	3745	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0044	837	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0045	3744	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0046	3744	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0047	3745	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0048	837	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0049	3745	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0050	3737	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0051	3738	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0052	3739	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0053	819	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0054	3731	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0055	3730	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0056	3731	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0057	3731	1	0	0	0	1	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0058	3731	1	0	0	0	1	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0059	848	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0060	3730	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0061	3731	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0062	3731	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0063	3724	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0064	839	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0065	811	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0066	3724	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0067	3723	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0068	3724	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0069	3724	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0070	3717	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0071	816	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0072	3719	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0073	3720	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0074	3718	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0075	3724	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0076	3724	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0077	812	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0078	3717	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0079	3717	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0080	846	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0081	805	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0082	834	1	0	0	1	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0083	3717	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0084	3713	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0085	3717	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0086	802	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0087	3705	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0088	3710	1	0	1	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0089	3711	1	1	0	0	0	0	copy fasta	FAM149A	chr4	186099704	186180337