JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM149A_chr4_186099704_186180337	0/0	t0090	3710	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149A_chr4_186099704_186180337	0/0	t0091	3710	1	0	0	0	0	1	copy fasta	FAM149A	chr4	186099704	186180337
FAM149B1_chr10_73163119_73249504	0/0	t0001	3707	117	34	13	56	0	14	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0002	3704	63	3	5	47	0	8	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0003	3710	13	11	2	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0004	3708	7	7	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0005	3704	5	4	1	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0006	3710	3	2	0	1	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0007	3707	3	3	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0008	3704	3	2	1	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0009	3717	2	2	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0010	3705	2	0	2	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0011	3704	2	0	0	2	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0012	3704	2	1	1	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0013	3716	1	0	0	1	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0014	3710	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0015	3710	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0016	3707	1	0	0	1	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0017	3704	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0018	3707	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0019	3707	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0020	3707	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0021	3707	1	0	1	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0022	3707	1	0	0	1	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0023	3704	1	1	0	0	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0024	3704	1	0	0	1	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0025	3704	1	0	0	1	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM149B1_chr10_73163119_73249504	0/0	t0026	3704	1	0	0	1	0	0	copy fasta	FAM149B1	chr10	73163119	73249504
FAM151A_chr1_54604181_54628525	1/1	t0001	218	323	87	57	134	9	34	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	t0002	218	116	7	23	72	6	8	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	t0003	218	4	4	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	t0004	218	3	1	0	0	1	1	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	t0005	218	1	1	0	0	0	0	copy fasta	FAM151A	chr1	54604181	54628525
FAM151A_chr1_54604181_54628525	0/0	t0006	218	1	0	0	0	0	1	copy fasta	FAM151A	chr1	54604181	54628525
FAM151B_chr5_80483100_80547563	1/1	t0001	756	334	71	70	137	12	42	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	t0002	756	14	14	0	0	0	0	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	t0003	756	2	2	0	0	0	0	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	t0004	756	2	0	0	2	0	0	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	t0005	756	2	0	0	2	0	0	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	t0006	756	1	1	0	0	0	0	copy fasta	FAM151B	chr5	80483100	80547563
FAM151B_chr5_80483100_80547563	0/0	t0007	756	1	0	0	1	0	0	copy fasta	FAM151B	chr5	80483100	80547563
FAM153A_chr5_177718364_177787899	1/0	t0001	1244	20	5	2	12	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/1	t0002	1244	5	0	2	0	0	2	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	t0003	1244	5	5	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	t0004	1244	3	3	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	t0005	1244	2	0	2	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM153A_chr5_177718364_177787899	0/0	t0006	1244	1	1	0	0	0	0	copy fasta	FAM153A	chr5	177718364	177787899
FAM156A_chrX_52942254_52963518	0/0	t0001	3150	91	31	25	26	1	8	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0002	3150	36	3	8	17	3	5	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0003	3149	10	3	4	0	2	1	copy fasta	FAM156A	chrX	52942254	52963518