Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AJAP1_chr1_4649609_4797534	0/0	t0138	10858	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0139	10854	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0140	10856	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0141	10870	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0142	10870	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0143	10868	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0144	10868	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0145	10868	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0146	10864	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0147	10860	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0148	10864	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0149	10856	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0150	10858	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0151	10856	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0152	10856	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0153	10856	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0154	10864	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0155	10863	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0156	10853	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0157	10864	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0158	10842	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0159	10854	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0160	10858	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0161	10874	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0162	10866	1	0	0	0	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0163	10871	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0164	10865	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0165	10873	1	0	0	0	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0166	10865	1	0	0	0	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/1	t0167	10865	1	0	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0168	10871	1	0	0	0	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0169	10861	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0170	10859	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0171	10859	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0172	10854	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0173	10852	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0174	10852	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0175	10858	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0176	10864	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0177	10865	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0178	10861	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0179	10870	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0180	10866	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0181	10866	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0182	10850	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0183	10874	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0184	10870	1	0	0	0	1	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0185	10866	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0186	10863	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0187	10858	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534