JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM156A_chrX_52942254_52963518	0/0	t0004	3150	4	3	1	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0005	3146	2	0	0	2	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0006	3158	1	0	1	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0007	3150	1	0	0	1	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0008	3149	1	1	0	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0009	3151	1	1	0	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0010	3150	1	1	0	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0011	3150	1	1	0	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0012	3148	1	0	0	0	0	1	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0013	3150	1	0	0	0	0	1	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0014	3151	1	0	0	1	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0015	3152	1	0	1	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0016	3150	1	0	0	1	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0017	3150	1	0	0	0	0	1	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0018	3151	1	1	0	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0019	3151	1	0	0	0	0	1	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0020	3145	1	0	0	1	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0021	3150	1	0	0	0	0	1	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0022	3148	1	1	0	0	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156A_chrX_52942254_52963518	0/0	t0023	3150	1	0	0	1	0	0	copy fasta	FAM156A	chrX	52942254	52963518
FAM156B_chrX_52892330_52913560	0/0	t0001	3116	99	21	20	49	2	7	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0002	3116	39	5	3	25	1	5	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0003	3112	14	5	1	6	0	2	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0004	3115	9	4	3	2	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0005	3116	5	5	0	0	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0006	3112	3	0	0	3	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0007	3112	3	3	0	0	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0008	3116	2	0	0	0	0	2	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0009	3116	1	1	0	0	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0010	3116	1	1	0	0	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0011	3116	1	0	0	1	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0012	3116	1	0	0	1	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0013	3116	1	0	0	0	0	1	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0014	3115	1	0	0	1	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0015	3112	1	1	0	0	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM156B_chrX_52892330_52913560	0/0	t0016	3115	1	0	0	1	0	0	copy fasta	FAM156B	chrX	52892330	52913560
FAM161A_chr2_61819848_61859060	0/0	t0001	1627	174	24	29	112	1	8	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	1/1	t0002	1627	138	40	19	49	6	22	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0003	1626	39	4	13	15	2	5	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0004	1624	20	0	9	0	4	7	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0005	1627	5	5	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0006	1627	2	2	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0007	1627	2	2	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0008	1627	2	0	0	0	2	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0009	1627	2	2	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0010	1627	2	2	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0011	1627	1	0	0	1	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0012	1627	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0013	1627	1	0	0	1	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0014	1627	1	0	0	0	1	0	copy fasta	FAM161A	chr2	61819848	61859060