JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM161A_chr2_61819848_61859060	0/0	t0015	1627	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0016	1627	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0017	1627	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0018	1627	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0019	1627	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0020	1627	1	1	0	0	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0021	1627	1	0	0	1	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0022	1627	1	0	0	1	0	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0023	1627	1	0	0	0	1	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161A_chr2_61819848_61859060	0/0	t0024	1624	1	0	0	0	1	0	copy fasta	FAM161A	chr2	61819848	61859060
FAM161B_chr14_73927276_73955094	0/0	t0001	2049	102	5	9	77	2	9	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/1	t0002	2049	72	0	10	56	2	3	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	1/0	t0003	2049	62	32	10	13	4	2	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0004	2053	56	7	17	15	5	12	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0005	2049	37	0	16	12	2	7	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0006	2049	32	0	3	18	1	10	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0007	2049	22	19	3	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0008	2049	13	12	1	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0009	2049	10	9	1	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0010	2049	7	0	7	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0011	2049	5	5	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0012	2060	4	4	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0013	2049	4	3	1	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0014	2049	3	0	0	2	0	1	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0015	2049	2	0	0	2	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0016	2053	2	0	0	2	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0017	2049	1	1	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0018	2049	1	0	0	1	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0019	2049	1	0	0	1	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0020	2049	1	0	0	0	0	1	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0021	2049	1	0	0	1	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0022	2049	1	1	0	0	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0023	2049	1	0	0	1	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0024	2049	1	0	0	1	0	0	copy fasta	FAM161B	chr14	73927276	73955094
FAM161B_chr14_73927276_73955094	0/0	t0025	2049	1	0	0	0	0	1	copy fasta	FAM161B	chr14	73927276	73955094
FAM162A_chr3_122379182_122417334	1/0	t0001	2588	131	39	27	44	6	14	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0002	2588	106	11	19	56	4	16	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/1	t0003	2587	82	6	8	56	4	7	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0004	2588	23	1	0	21	0	1	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0005	2588	21	5	3	10	0	3	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0006	2584	19	17	2	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0007	2588	9	0	5	0	2	2	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0008	2584	6	0	5	1	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0009	2588	5	5	0	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0010	2589	5	5	0	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0011	2588	3	0	0	0	0	3	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0012	2587	2	0	0	2	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0013	2588	2	1	1	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0014	2587	1	0	0	1	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0015	2587	1	0	0	1	0	0	copy fasta	FAM162A	chr3	122379182	122417334