JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM162A_chr3_122379182_122417334	0/0	t0016	2588	1	0	1	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0017	2588	1	1	0	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0018	2588	1	1	0	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0019	2588	1	1	0	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0020	2588	1	0	1	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162A_chr3_122379182_122417334	0/0	t0021	2588	1	1	0	0	0	0	copy fasta	FAM162A	chr3	122379182	122417334
FAM162B_chr6_116747197_116770719	1/1	t0001	544	454	86	80	225	18	43	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	t0002	544	8	8	0	0	0	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	t0003	544	3	0	0	3	0	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	t0004	544	2	0	0	2	0	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	t0005	544	2	2	0	0	0	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	t0006	544	1	0	0	1	0	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	t0007	544	1	0	0	0	0	1	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	t0008	544	1	1	0	0	0	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	t0009	544	1	1	0	0	0	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM162B_chr6_116747197_116770719	0/0	t0010	544	1	0	0	1	0	0	copy fasta	FAM162B	chr6	116747197	116770719
FAM163A_chr1_179738291_179821198	0/1	t0001	2274	51	1	10	24	3	12	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0002	2256	12	2	1	9	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0003	2270	11	10	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0004	2276	11	0	0	10	1	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0005	2274	10	6	0	4	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0006	2272	7	2	0	5	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0007	2262	7	7	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0008	2270	7	0	3	0	1	3	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0009	2266	7	6	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0010	2270	6	2	0	3	0	1	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0011	2274	5	5	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0012	2272	4	2	1	0	1	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0013	2278	4	1	1	0	2	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	1/0	t0014	2278	4	0	3	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0015	2264	4	4	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0016	2280	3	2	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0017	2274	3	3	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0018	2272	3	3	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0019	2274	3	0	0	0	0	3	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0020	2272	3	0	1	0	1	1	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0021	2274	3	0	3	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0022	2276	2	0	0	1	0	1	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0023	2276	2	0	2	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0024	2274	2	0	1	0	1	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0025	2264	2	2	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0026	2264	2	2	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0027	2278	2	2	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0028	2274	2	2	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0029	2278	2	2	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0030	2270	2	1	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0031	2249	1	0	0	0	0	1	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0032	2274	1	0	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0033	2270	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0034	2278	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198