JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM163A_chr1_179738291_179821198	0/0	t0035	2268	1	0	0	1	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0036	2264	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0037	2258	1	0	0	1	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0038	2276	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0039	2276	1	0	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0040	2274	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0041	2272	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0042	2272	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0043	2268	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0044	2278	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0045	2280	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0046	2274	1	0	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0047	2268	1	0	0	0	1	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0048	2276	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0049	2278	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0050	2278	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0051	2274	1	0	0	1	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0052	2272	1	0	0	0	0	1	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0053	2278	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0054	2276	1	0	0	0	0	1	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0055	2274	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0056	2274	1	0	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0057	2274	1	0	0	0	0	1	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0058	2276	1	0	0	1	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0059	2268	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0060	2270	1	0	0	0	1	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0061	2274	1	0	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0062	2274	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0063	2272	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0064	2262	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0065	2272	1	0	0	0	0	1	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0066	2272	1	0	1	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0067	2270	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0068	2268	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0069	2266	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163A_chr1_179738291_179821198	0/0	t0070	2274	1	1	0	0	0	0	copy fasta	FAM163A	chr1	179738291	179821198
FAM163B_chr9_133572081_133614389	0/0	t0001	2281	115	9	15	78	4	9	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0002	2278	89	17	9	50	4	9	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0003	2281	45	19	10	7	3	6	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0004	2281	33	16	10	1	2	4	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0005	2281	22	5	6	4	2	5	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0006	2281	14	10	1	0	0	3	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	1/0	t0007	2278	12	0	10	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0008	2281	6	1	4	0	0	1	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0009	2281	5	4	1	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0010	2281	5	1	1	0	0	3	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0011	2281	4	2	1	0	1	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0012	2278	3	0	0	3	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0013	2278	3	1	2	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0014	2281	3	2	1	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389