JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM163B_chr9_133572081_133614389	0/0	t0015	2278	2	0	0	0	0	2	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0016	2278	2	1	0	0	1	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0017	2281	2	0	2	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0018	2281	1	0	0	0	1	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0019	2278	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0020	2281	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0021	2281	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/1	t0022	2281	1	0	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0023	2281	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0024	2281	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0025	2281	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0026	2281	1	0	1	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0027	2281	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0028	2281	1	0	0	0	0	1	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0029	2281	1	0	1	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0030	2281	1	0	1	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0031	2278	1	0	0	1	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0032	2278	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0033	2278	1	1	0	0	0	0	copy fasta	FAM163B	chr9	133572081	133614389
FAM163B_chr9_133572081_133614389	0/0	t0034	2278	1	0	0	0	0	1	copy fasta	FAM163B	chr9	133572081	133614389
FAM166A_chr9_137238599_137252751	0/0	t0001	138	418	100	80	176	16	46	copy fasta	FAM166A	chr9	137238599	137252751
FAM166B_chr9_35556831_35568878	1/1	t0001	227	288	72	30	143	10	31	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	t0002	219	145	22	50	52	6	15	copy fasta	FAM166B	chr9	35556831	35568878
FAM166B_chr9_35556831_35568878	0/0	t0003	223	3	0	0	3	0	0	copy fasta	FAM166B	chr9	35556831	35568878
FAM166C_chr2_26557587_26584524	1/1	t0001	113	270	80	58	107	7	16	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	t0002	113	140	14	15	80	5	26	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	t0003	113	1	0	0	1	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM166C_chr2_26557587_26584524	0/0	t0004	113	1	0	1	0	0	0	copy fasta	FAM166C	chr2	26557587	26584524
FAM167A_chr8_11416476_11471753	0/0	t0001	3423	103	3	22	63	4	11	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	1/0	t0002	3423	62	4	9	43	0	5	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0003	3419	14	13	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0004	3425	8	0	2	6	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0005	3419	7	0	4	0	1	2	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0006	3423	6	0	0	6	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0007	3427	6	0	0	5	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0008	3423	5	3	2	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0009	3419	5	5	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0010	3419	5	1	1	1	0	2	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0011	3421	5	2	1	2	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0012	3419	5	4	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0013	3434	4	0	2	0	2	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0014	3424	4	0	2	0	2	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0015	3423	4	4	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0016	3423	3	0	0	0	0	3	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0017	3415	3	3	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0018	3438	3	0	3	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0019	3421	3	0	3	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0020	3421	3	3	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0021	3419	3	3	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0022	3419	3	3	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753