JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM167A_chr8_11416476_11471753	0/0	t0023	3419	3	0	0	0	0	3	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0024	3415	3	3	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0025	3419	3	3	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0026	3423	3	0	1	2	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0027	3419	2	0	2	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0028	3423	2	2	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0029	3419	2	2	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0030	3413	2	2	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0031	3414	2	2	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0032	3414	2	0	2	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0033	3429	2	0	0	2	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0034	3423	2	0	1	0	1	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0035	3440	2	0	0	0	0	2	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0036	3438	2	0	0	0	0	2	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/1	t0037	3434	2	0	0	0	1	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0038	3423	2	0	2	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0039	3423	2	0	2	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0040	3419	2	0	0	0	0	2	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0041	3429	2	0	0	2	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0042	3419	2	0	0	1	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0043	3419	2	2	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0044	3419	2	2	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0045	3414	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0046	3421	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0047	3423	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0048	3438	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0049	3434	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0050	3421	1	0	0	0	1	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0051	3423	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0052	3419	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0053	3421	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0054	3423	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0055	3405	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0056	3440	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0057	3421	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0058	3423	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0059	3423	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0060	3438	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0061	3438	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0062	3415	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0063	3423	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0064	3419	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0065	3423	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0066	3421	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0067	3419	1	0	0	1	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0068	3423	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0069	3423	1	0	0	1	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0070	3427	1	0	0	1	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0071	3423	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0072	3423	1	0	0	1	0	0	copy fasta	FAM167A	chr8	11416476	11471753