JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM167A_chr8_11416476_11471753	0/0	t0073	3423	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0074	3421	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0075	3419	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0076	3405	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0077	3423	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0078	3421	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0079	3419	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0080	3419	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0081	3423	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0082	3421	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0083	3401	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0084	3419	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0085	3424	1	0	0	0	1	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0086	3423	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0087	3421	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0088	3413	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0089	3405	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0090	3414	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0091	3442	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0092	3421	1	0	0	0	1	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0093	3414	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0094	3425	1	0	0	1	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0095	3423	1	0	0	1	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0096	3421	1	0	0	1	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0097	3419	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0098	3419	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0099	3419	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0100	3423	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0101	3421	1	0	0	0	0	1	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0102	3423	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0103	3419	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0104	3421	1	0	1	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0105	3414	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167A_chr8_11416476_11471753	0/0	t0106	3419	1	1	0	0	0	0	copy fasta	FAM167A	chr8	11416476	11471753
FAM167B_chr1_32242222_32253856	1/1	t0001	456	376	94	61	155	18	46	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	t0002	456	1	0	0	1	0	0	copy fasta	FAM167B	chr1	32242222	32253856
FAM167B_chr1_32242222_32253856	0/0	t0003	456	1	0	1	0	0	0	copy fasta	FAM167B	chr1	32242222	32253856
FAM168A_chr11_73395487_73603112	1/1	t0001	6485	52	16	8	19	3	4	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0002	6484	15	15	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0003	6488	14	0	1	13	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0004	6491	11	11	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0005	6488	8	1	3	2	1	1	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0006	6481	6	4	0	0	1	1	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0007	6482	5	0	3	0	0	2	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0008	6488	4	0	2	0	2	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0009	6485	4	3	1	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0010	6487	3	1	0	2	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0011	6491	3	3	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0012	6485	3	0	0	3	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0013	6485	3	3	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112