JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM168A_chr11_73395487_73603112	0/0	t0014	6485	2	2	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0015	6485	2	2	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0016	6491	2	2	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0017	6482	2	2	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0018	6494	2	2	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0019	6499	2	1	1	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0020	6488	2	0	2	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0021	6485	2	0	0	2	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0022	6491	2	2	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0023	6485	2	0	2	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0024	6487	1	0	0	1	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0025	6494	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0026	6482	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0027	6485	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0028	6487	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0029	6494	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0030	6488	1	0	0	0	0	1	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0031	6485	1	0	0	1	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0032	6485	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0033	6482	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0034	6488	1	0	1	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0035	6482	1	0	0	0	1	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0036	6488	1	0	0	0	0	1	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0037	6491	1	0	1	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0038	6488	1	0	1	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0039	6488	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0040	6491	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0041	6491	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0042	6490	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0043	6496	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0044	6485	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0045	6485	1	0	0	1	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0046	6485	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0047	6488	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0048	6484	1	0	0	0	1	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0049	6488	1	1	0	0	0	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0050	6485	1	0	0	0	0	1	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0051	6485	1	0	0	0	1	0	copy fasta	FAM168A	chr11	73395487	73603112
FAM168A_chr11_73395487_73603112	0/0	t0052	6488	1	0	0	0	0	1	copy fasta	FAM168A	chr11	73395487	73603112
FAM168B_chr2_131042876_131098460	1/0	t0001	4848	140	34	38	42	5	20	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0002	4847	32	1	6	19	3	3	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0003	4847	15	12	0	1	0	2	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0004	4848	9	9	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0005	4847	7	6	1	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0006	4848	6	4	2	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0007	4847	5	4	1	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0008	4847	5	4	1	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0009	4847	3	1	2	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0010	4847	3	3	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/1	t0011	4847	3	0	1	0	1	0	copy fasta	FAM168B	chr2	131042876	131098460