JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM168B_chr2_131042876_131098460	0/0	t0012	4848	3	3	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0013	4847	3	3	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0014	4847	2	2	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0015	4847	2	0	1	0	1	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0016	4848	2	2	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0017	4848	2	2	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0018	4847	1	0	0	1	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0019	4847	1	0	0	0	0	1	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0020	4847	1	0	0	0	0	1	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0021	4848	1	0	0	1	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0022	4848	1	0	0	1	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0023	4847	1	0	1	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0024	4847	1	1	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0025	4847	1	1	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0026	4847	1	1	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0027	4847	1	0	0	0	0	1	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0028	4848	1	1	0	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0029	4848	1	0	0	1	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0030	4848	1	0	1	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0031	4848	1	0	1	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0032	4848	1	0	1	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0033	4848	1	0	0	1	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0034	4848	1	0	1	0	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM168B_chr2_131042876_131098460	0/0	t0035	4847	1	0	0	1	0	0	copy fasta	FAM168B	chr2	131042876	131098460
FAM169A_chr5_74772574_74871387	0/0	t0001	4113	74	14	18	20	6	16	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0002	4112	45	2	12	25	1	5	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	1/0	t0003	4113	44	1	6	28	2	6	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0004	4111	34	14	11	2	2	5	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0005	4113	26	6	6	10	1	3	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0006	4112	20	15	2	3	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0007	4112	11	11	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0008	4111	11	11	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0009	4112	7	0	0	7	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0010	4112	6	3	3	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/1	t0011	4107	5	0	2	0	2	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0012	4107	2	2	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0013	4113	2	0	0	0	0	2	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0014	4111	2	2	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0015	4112	1	1	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0016	4112	1	1	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0017	4113	1	0	0	1	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0018	4107	1	1	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0019	4113	1	0	1	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0020	4113	1	1	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0021	4113	1	1	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0022	4113	1	0	0	1	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0023	4113	1	0	1	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0024	4113	1	0	0	1	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0025	4113	1	0	0	1	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0026	4112	1	0	0	1	0	0	copy fasta	FAM169A	chr5	74772574	74871387