JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM169A_chr5_74772574_74871387	0/0	t0027	4112	1	0	0	1	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0028	4112	1	0	1	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0029	4111	1	0	1	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0030	4111	1	1	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0031	4112	1	1	0	0	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0032	4112	1	0	0	1	0	0	copy fasta	FAM169A	chr5	74772574	74871387
FAM169A_chr5_74772574_74871387	0/0	t0033	4113	1	0	0	0	0	1	copy fasta	FAM169A	chr5	74772574	74871387
FAM170A_chr5_119624558_119640822	1/1	t0001	387	350	74	49	187	8	30	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	t0002	387	81	19	25	9	10	18	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	t0003	387	4	2	2	0	0	0	copy fasta	FAM170A	chr5	119624558	119640822
FAM170A_chr5_119624558_119640822	0/0	t0004	387	1	1	0	0	0	0	copy fasta	FAM170A	chr5	119624558	119640822
FAM170B_chr10_49126154_49139021	1/0	t0001	563	193	37	25	111	6	13	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/1	t0002	563	91	8	24	45	3	10	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	t0003	563	54	21	10	11	2	10	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	t0004	563	19	16	3	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	t0005	563	14	5	5	0	1	3	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	t0006	563	11	2	1	2	0	6	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	t0007	563	3	3	0	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	t0008	563	1	0	1	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	t0009	563	1	1	0	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	t0010	563	1	0	1	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	t0011	563	1	1	0	0	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM170B_chr10_49126154_49139021	0/0	t0012	563	1	0	0	1	0	0	copy fasta	FAM170B	chr10	49126154	49139021
FAM171A1_chr10_15206643_15376289	1/0	t0001	1510	100	28	22	30	5	14	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0002	1513	98	4	19	52	8	15	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0003	1510	43	15	6	22	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0004	1511	8	8	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0005	1509	6	4	0	2	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0006	1509	5	5	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0007	1512	4	1	1	1	1	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0008	1510	4	0	1	3	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0009	1519	3	3	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0010	1513	3	2	1	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0011	1513	3	0	0	3	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0012	1516	2	2	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0013	1510	2	2	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0014	1510	2	2	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0015	1511	2	1	1	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0016	1511	2	2	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0017	1509	2	2	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0018	1516	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0019	1513	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0020	1513	1	1	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0021	1513	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0022	1510	1	0	0	0	0	1	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0023	1510	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0024	1510	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0025	1510	1	1	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0026	1510	1	1	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0027	1510	1	1	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289