Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AJAP1_chr1_4649609_4797534	0/0	t0188	10854	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0189	10870	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0190	10864	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0191	10862	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0192	10862	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0193	10852	1	1	0	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0194	10871	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0195	10862	1	0	0	0	0	1	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0196	10867	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0197	10863	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0198	10863	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0199	10863	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0200	10861	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0201	10863	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0202	10861	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0203	10854	1	0	1	0	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJAP1_chr1_4649609_4797534	0/0	t0204	10856	1	0	0	1	0	0	copy fasta	AJAP1	chr1	4649609	4797534
AJM1_chr9_136837478_136853801	1/1	t0001	1712	343	79	73	136	14	39	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0002	1712	4	4	0	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0003	1712	2	0	0	2	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0004	1712	2	2	0	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0005	1712	2	0	1	0	0	1	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0006	1712	1	0	1	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0007	1690	1	1	0	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0008	1712	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0009	1712	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0010	1712	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0011	1712	1	0	0	0	0	1	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0012	1712	1	0	0	1	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0013	1712	1	0	0	0	0	1	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0014	1712	1	0	1	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0015	1712	1	1	0	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJM1_chr9_136837478_136853801	0/0	t0016	1729	1	1	0	0	0	0	copy fasta	AJM1	chr9	136837478	136853801
AJUBA_chr14_22966177_22987551	1/1	t0001	2552	179	23	42	72	10	30	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0002	2556	45	5	11	20	3	6	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0003	2556	41	15	11	8	3	4	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0004	2556	21	20	1	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0005	2552	18	13	3	0	0	2	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0006	2556	10	9	1	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0007	2556	4	4	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0008	2556	3	3	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0009	2556	3	1	0	2	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0010	2552	2	0	2	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0011	2556	2	2	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0012	2556	1	1	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0013	2556	1	1	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0014	2552	1	1	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0015	2556	1	1	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0016	2552	1	0	1	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551
AJUBA_chr14_22966177_22987551	0/0	t0017	2552	1	1	0	0	0	0	copy fasta	AJUBA	chr14	22966177	22987551