JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM171A1_chr10_15206643_15376289	0/0	t0028	1510	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0029	1510	1	1	0	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0030	1510	1	0	1	0	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A1_chr10_15206643_15376289	0/0	t0031	1510	1	0	0	1	0	0	copy fasta	FAM171A1	chr10	15206643	15376289
FAM171A2_chr17_44348215_44368853	1/1	t0001	658	381	71	58	192	15	43	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0002	659	17	14	1	1	0	1	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0003	658	4	0	2	0	2	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0004	658	2	1	1	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0005	658	2	0	0	0	1	1	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0006	658	2	0	2	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0007	648	2	1	0	0	0	1	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0008	658	1	1	0	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0009	659	1	1	0	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0010	659	1	1	0	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0011	822	1	1	0	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0012	658	1	1	0	0	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171A2_chr17_44348215_44368853	0/0	t0013	658	1	0	0	1	0	0	copy fasta	FAM171A2	chr17	44348215	44368853
FAM171B_chr2_186689060_186770959	0/0	t0001	3249	110	20	29	37	6	18	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0002	3250	57	0	15	33	3	6	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	1/0	t0003	3251	33	19	5	8	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0004	3250	29	14	5	7	0	3	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0005	3251	15	4	3	0	1	7	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0006	3252	10	2	1	0	2	5	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0007	3248	9	2	3	2	1	1	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0008	3250	9	9	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0009	3247	8	6	2	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0010	3251	8	0	2	4	0	2	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0011	3250	5	0	0	5	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0012	3249	4	0	0	4	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0013	3250	3	2	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0014	3249	3	0	0	3	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0015	3252	3	1	0	2	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/1	t0016	3252	3	1	1	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0017	3249	2	0	1	0	0	1	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0018	3251	2	2	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0019	3248	2	2	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0020	3250	2	2	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0021	3250	2	0	1	0	1	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0022	3249	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0023	3252	1	1	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0024	3249	1	0	0	0	0	1	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0025	3250	1	0	1	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0026	3250	1	1	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0027	3251	1	1	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0028	3226	1	1	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0029	3249	1	1	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0030	3249	1	0	0	1	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0031	3249	1	1	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0032	3251	1	1	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM171B_chr2_186689060_186770959	0/0	t0033	3252	1	0	1	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959