JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
FAM171B_chr2_186689060_186770959	0/0	t0034	3249	1	1	0	0	0	0	copy fasta	FAM171B	chr2	186689060	186770959
FAM172A_chr5_93612725_94116663	1/1	t0001	3434	63	17	10	23	3	8	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0002	3438	39	22	5	10	1	1	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0003	3433	4	3	0	1	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0004	3437	4	2	0	2	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0005	3438	4	4	0	0	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0006	3438	3	3	0	0	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0007	3435	2	2	0	0	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0008	3434	1	0	1	0	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0009	3434	1	0	0	1	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0010	3434	1	0	0	1	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0011	3434	1	0	0	0	0	1	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0012	3434	1	1	0	0	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0013	3438	1	1	0	0	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM172A_chr5_93612725_94116663	0/0	t0014	3433	1	1	0	0	0	0	copy fasta	FAM172A	chr5	93612725	94116663
FAM174A_chr5_100530374_100591741	0/0	t0001	715	139	66	31	27	7	8	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	1/1	t0002	715	132	4	27	82	7	10	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	t0003	715	19	15	3	0	0	1	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	t0004	715	3	2	1	0	0	0	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	t0005	715	2	0	0	2	0	0	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	t0006	715	1	0	0	0	0	1	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	t0007	715	1	1	0	0	0	0	copy fasta	FAM174A	chr5	100530374	100591741
FAM174A_chr5_100530374_100591741	0/0	t0008	715	1	0	0	1	0	0	copy fasta	FAM174A	chr5	100530374	100591741
FAM174B_chr15_92612448_92660775	0/0	t0001	2125	61	6	12	38	0	5	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0002	2126	48	9	4	34	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/1	t0003	2124	34	4	10	9	5	5	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	1/0	t0004	2125	29	8	7	4	3	6	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0005	2124	28	0	4	19	1	4	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0006	2124	23	0	8	14	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0007	2124	19	2	5	7	0	5	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0008	2125	11	4	0	7	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0009	2125	11	10	1	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0010	2110	9	5	3	0	1	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0011	2126	8	7	1	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0012	2124	7	1	2	3	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0013	2123	7	0	0	6	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0014	2123	6	0	5	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0015	2125	6	6	0	0	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0016	2126	5	2	0	0	1	2	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0017	2125	5	0	0	5	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0018	2125	4	0	3	0	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0019	2124	3	0	0	2	0	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0020	2123	3	1	1	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0021	2126	3	0	0	1	0	2	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0022	2123	3	0	2	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0023	2123	3	0	0	3	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0024	2124	3	2	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0025	2125	3	0	0	3	0	0	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0026	2125	2	0	0	0	1	1	copy fasta	FAM174B	chr15	92612448	92660775
FAM174B_chr15_92612448_92660775	0/0	t0027	2123	2	1	0	1	0	0	copy fasta	FAM174B	chr15	92612448	92660775